Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Erysiphe_20necator_20[genbank_20GCA_5F000798715.1_202014-12-08] 5,935 sequences; 52,505,057 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq1477 138 1e-27 seq1135 116 3e-21 seq849 84.2 2e-11 >seq1477 Length=21063 Score = 138 bits (152), Expect = 1e-27 Identities = 157/207 (76%), Gaps = 8/207 (4%) Strand=Plus/Plus Query 25023 ACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCTGACACTATCGA----GTCACTGAA 25078 ||||||||| | || || ||||||| ||||| |||||||| || || |||| || Sbjct 16576 ACCGGTAAAACTATTACTCTCGAAGTCGAGTCTTCTGACACCATTGATAACGTCAA--AA 16633 Query 25079 GCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCGG 25138 |||||| ||| || |||||||| ||||| || ||||||||||| | || ||||| || Sbjct 16634 GCAAAAT-TCAA-GATAAAGAAGGAATTCCTCCGGACCAACAGCGATTAATATTTGCAGG 16691 Query 25139 CAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAATATTCAAAAAGAATCCACGCT 25198 |||||| | || |||| || ||| | || ||||| || || ||||||||||| || Sbjct 16692 AAAACAACTTGAGGATGGCCGAACTTTATCAGACTACAACATCCAGAAAGAATCCACTCT 16751 Query 25199 ACATTTAGTGCTAAGGCTAAGAGGAGG 25225 ||||||||||| | ||||||||||| Sbjct 16752 TCATTTAGTGCTTCGTCTAAGAGGAGG 16778 Score = 109 bits (120), Expect = 5e-19 Identities = 152/209 (73%), Gaps = 8/209 (4%) Strand=Plus/Plus Query 25023 ACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCTGACACTATCGAGTCACTG----AA 25078 || || ||| | || || | ||||| || || ||||| |||||||| || || || Sbjct 15737 ACTGGCAAAACTATAACCCTTGAAGTCGAATCATCTGATACTATCGA--CAATGTAAAAA 15794 Query 25079 GCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCGG 25138 |||||| ||| ||||||||||| || ||||| ||||||||| | | ||||| || || Sbjct 15795 GCAAAAT-TCAG-GACAAAGAAGGCATCCCACCAGACCAACAGAGATTGATTTTCGCTGG 15852 Query 25139 CAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAATATTCAAAAAGAATCCACGCT 25198 || || || || |||| || || | ||| |||||||| |||||||||||||| || Sbjct 15853 AAAGCAGTTGGAGGATGGCCGAACACTTTCCGACTACAATATACAAAAAGAATCCACTCT 15912 Query 25199 ACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227 || ||||| ||| | || | || |||| Sbjct 15913 TCACTTAGTCCTACGTTTACGCGGTGGAA 15941 Score = 100 bits (110), Expect = 2e-16 Identities = 135/188 (72%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 25023 ACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCTGACACTATCGAGTCACTGAAGCAA 25082 || |||||| |||| || | || || ||||| || ||||| || || |||| Sbjct 16291 ACTGGTAAAACCATTACCCTTGAGGTAGAGTCATCCGACACCATTGATAATGTGAAAAGT 16350 Query 25083 AAAATCACTGACAAAGAAGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCGGCAAA 25142 ||||| ||||| ||||| |||||||| || ||||| | | || ||||| |||||| Sbjct 16351 AAAATACAGGACAAGGAAGGAATTCCACCCGATCAACAAAGATTAATCTTTGCTGGCAAA 16410 Query 25143 CAATTAGAAGATGATCGCACTGTGGGCGATTACAATATTCAAAAAGAATCCACGCTACAT 25202 ||| | || |||| ||| || | |||||||| |||||||||||||| || || ||| Sbjct 16411 CAACTTGAGGATGGTCGAACATTATCTGATTACAACATTCAAAAAGAATCTACCCTTCAT 16470 Query 25203 TTAGTGCT 25210 |||| || Sbjct 16471 CTAGTTCT 16478 Score = 98.7 bits (108), Expect = 9e-16 Identities = 137/190 (72%), Gaps = 4/190 (2%) Strand=Plus/Plus Query 25023 ACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCTGACACTATCGAGTCACTGAAGCAA 25082 || || ||| ||||||| | || || |||||||||||||| ||||| || || | || Sbjct 16015 ACTGGAAAAACCATCACTCTAGAGGTCGAGTCGTCTGACACCATCGA--CAATGTAAAAA 16072 Query 25083 --AAAATCACTGACAAAGAAGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCGGCA 25140 ||||| ||||||||||| |||||||| || ||||| | | |||||||| || | Sbjct 16073 GTAAAATACAAGACAAAGAAGGAATTCCACCCGATCAACAAAGACTAATTTTTGCTGGAA 16132 Query 25141 AACAATTAGAAGATGATCGCACTGTGGGCGATTACAATATTCAAAAAGAATCCACGCTAC 25200 ||||| | || || | ||| || | || || || || ||||||||||| || || | Sbjct 16133 AACAACTTGAGGACGGTCGAACACTTTCTGACTATAACATCCAAAAAGAATCGACACTCC 16192 Query 25201 ATTTAGTGCT 25210 | || || || Sbjct 16193 ACTTGGTCCT 16202 >seq1135 Length=44572 Score = 116 bits (128), Expect = 3e-21 Identities = 165/230 (72%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || || || | || |||||| | || || | || |||||||| || Sbjct 30677 ATGCAAATTTTCGTGAAAACCCTCACGGGTAAAACTATTACGCTTGAGGTGGAGTCATCG 30736 Query 25059 GACACTATCGAGTCACTGAAGCA--AAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 ||||| ||||| || || | | ||||||| || || ||||| ||||||||||||| Sbjct 30737 GACACCATCGA--CAATGTAAAATCAAAAATCCAAGATAAGGAAGGCATTCCACCTGACC 30794 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 |||| || | |||||||| || |||||| | || || | || || || || |||| Sbjct 30795 AACAACGTTTGATTTTTGCGGGAAAACAACTCGAGGACGGCCGGACATTGTCTGACTACA 30854 Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGA 25226 | || ||||||||||| || || ||| | || || | || | |||||| Sbjct 30855 ACATCCAAAAAGAATCTACTCTTCATCTCGTACTTCGTCTTCGTGGAGGA 30904 >seq849 Length=64135 Score = 84.2 bits (92), Expect = 2e-11 Identities = 126/179 (70%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 25008 TTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCTGACACTATC 25067 || || ||||| | || || ||| | ||||| | || || ||||| |||||||| || Sbjct 59893 TTCGTCAAGACCCTAACTGGCAAAACTATCACCTTAGAGGTTGAGTCCTCTGACACAATT 59834 Query 25068 GAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAACAGCGGATT 25127 || |||| ||| ||| || ||||| || || || ||||| ||||| || | Sbjct 59833 GATAATGTGAAAGCAAAGATCCAGGATAAAGAGGGAATCCCCCCTGATCAACAACGTTTG 59774 Query 25128 ATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAATATTCAAAA 25186 || ||||| || ||||| | ||||||| || ||| | ||||||||||||||||| Sbjct 59773 ATATTTGCTGGTAAACAGCTTGAAGATGGACGAACTCTTTCTGATTACAATATTCAAAA 59715 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433296656167025