Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Erysiphe_20necator_20[genbank_20GCA_5F000798715.1_202014-12-08] 5,935 sequences; 52,505,057 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq1135 136 3e-27 seq1477 129 5e-25 seq849 84.2 2e-11 >seq1135 Length=44572 Score = 136 bits (150), Expect = 3e-27 Identities = 152/203 (75%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 22213 GTAAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAA 22272 |||| ||||||||||| || ||||| | || |||||||| | || ||||| ||||| Sbjct 30671 GTAATCATGCAAATTTTCGTGAAAACCCTCACGGGTAAAACTATTACGCTTGAGGTGGAG 30730 Query 22273 ACCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCC 22332 | | || ||| | ||| || | ||| |||||| ||||| ||||| || |||||||| Sbjct 30731 TCATCGGACACCATCGACAATGTAAAATCAAAAATCCAAGATAAGGAAGGCATTCCACCT 30790 Query 22333 GATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGAT 22392 || ||||||||| | || ||||| || ||||| | ||||| ||| || | || || Sbjct 30791 GACCAACAACGTTTGATTTTTGCGGGAAAACAACTCGAGGACGGCCGGACATTGTCTGAC 30850 Query 22393 TACAACATTCAAAAAGAATCCAC 22415 |||||||| ||||||||||| || Sbjct 30851 TACAACATCCAAAAAGAATCTAC 30873 >seq1477 Length=21063 Score = 129 bits (142), Expect = 5e-25 Identities = 151/204 (74%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 22243 ACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAA 22302 || |||||||| | || ||||| || || | |||| ||| | || || | ||| Sbjct 16291 ACTGGTAAAACCATTACCCTTGAGGTAGAGTCATCCGACACCATTGATAATGTGAAAAGT 16350 Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 ||||| || |||||||| || |||||||||||||||||| | | || ||||| |||||| Sbjct 16351 AAAATACAGGACAAGGAAGGAATTCCACCCGATCAACAAAGATTAATCTTTGCTGGCAAA 16410 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACAT 22422 || | |||||| || || | || ||||||||||||||||||||||| ||| | ||| Sbjct 16411 CAACTTGAGGATGGTCGAACATTATCTGATTACAACATTCAAAAAGAATCTACCCTTCAT 16470 Query 22423 TTAGTTTTGCGATTGCGCGGAGGT 22446 ||||| | || | || || ||| Sbjct 16471 CTAGTTCTCCGTCTTCGTGGTGGT 16494 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| ||||| || || || ||||| | ||||||||||| ||| | | Sbjct 16780 ATGCAGATATTTGTCAAAACATTGACTGGGAAAACAATAACTCTTGAAGTAGAATCTTCA 16839 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | ||| | ||||| || || ||||| || || ||||||||||| || ||| Sbjct 16840 GATACAATAGACAACGTCAAAAGTAAGATCCAAGATAAAGAAGGTATTCCACCGGACCAA 16899 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||| | | || ||||| || || || | || ||| || || | |||||||||| Sbjct 16900 CAAAGATTGATCTTTGCTGGAAAGCAACTTGAAGATGGACGTACTCTTAACGATTACAAC 16959 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || ||||| ||||| || | || ||||| | || | ||||| ||| Sbjct 16960 ATACAAAAGGAATCGACTCTCCACTTAGTGCTTCGTCTTCGCGGTGGT 17007 Score = 113 bits (124), Expect = 4e-20 Identities = 136/185 (74%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 22243 ACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAA 22302 ||||||||||| | ||||| ||||| || | | || ||| | || | ||||| Sbjct 16576 ACCGGTAAAACTATTACTCTCGAAGTCGAGTCTTCTGACACCATTGATAACGTCAAAAGC 16635 Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 ||||||||||| || || || ||||| || || ||||| || | |||||||| || ||| Sbjct 16636 AAAATTCAAGATAAAGAAGGAATTCCTCCGGACCAACAGCGATTAATATTTGCAGGAAAA 16695 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACAT 22422 || | |||||| ||| || | || || |||||||| || ||||||||||| | ||| Sbjct 16696 CAACTTGAGGATGGCCGAACTTTATCAGACTACAACATCCAGAAAGAATCCACTCTTCAT 16755 Query 22423 TTAGT 22427 ||||| Sbjct 16756 TTAGT 16760 Score = 109 bits (120), Expect = 5e-19 Identities = 146/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 22243 ACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAA 22302 || || ||||| | || |||||||| ||| | | ||||| | ||| || | ||| Sbjct 15737 ACTGGCAAAACTATAACCCTTGAAGTCGAATCATCTGATACTATCGACAATGTAAAAAGC 15796 Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 |||||||| ||||| || || || ||||| || ||||| | | || || || || || Sbjct 15797 AAAATTCAGGACAAAGAAGGCATCCCACCAGACCAACAGAGATTGATTTTCGCTGGAAAG 15856 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACAT 22422 ||||| |||||| ||| || | ||||| ||||| || |||||||||||||| | || Sbjct 15857 CAGTTGGAGGATGGCCGAACACTTTCCGACTACAATATACAAAAAGAATCCACTCTTCAC 15916 Query 22423 TTAGTTTTGCGATTGCGCGGAGG 22445 ||||| | || || ||||| || Sbjct 15917 TTAGTCCTACGTTTACGCGGTGG 15939 Score = 100 bits (110), Expect = 2e-16 Identities = 126/173 (73%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 22243 ACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAA 22302 || || ||||| ||||||| || || || | | || ||| | ||| || | ||| Sbjct 16015 ACTGGAAAAACCATCACTCTAGAGGTCGAGTCGTCTGACACCATCGACAATGTAAAAAGT 16074 Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 ||||| |||||||| || || |||||||||||||||||| | || || ||||| || ||| Sbjct 16075 AAAATACAAGACAAAGAAGGAATTCCACCCGATCAACAAAGACTAATTTTTGCTGGAAAA 16134 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCAC 22415 || | ||||| || || | || || || ||||| ||||||||||| || Sbjct 16135 CAACTTGAGGACGGTCGAACACTTTCTGACTATAACATCCAAAAAGAATCGAC 16187 >seq849 Length=64135 Score = 84.2 bits (92), Expect = 2e-11 Identities = 126/179 (70%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 22228 TTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTG 22287 || || || || |||| || ||||| |||| | || || || || | || || | Sbjct 59893 TTCGTCAAGACCCTAACTGGCAAAACTATCACCTTAGAGGTTGAGTCCTCTGACACAATT 59834 Query 22288 GACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTT 22347 || || | ||| ||| || || || || ||||| || || || |||||||||||| | Sbjct 59833 GATAATGTGAAAGCAAAGATCCAGGATAAAGAGGGAATCCCCCCTGATCAACAACGTTTG 59774 Query 22348 ATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAA 22406 |||||||| || |||||| | || ||| || || | || |||||||| |||||||| Sbjct 59773 ATATTTGCTGGTAAACAGCTTGAAGATGGACGAACTCTTTCTGATTACAATATTCAAAA 59715 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419697639893275