Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Erysiphe_20necator_20[genbank_20GCA_5F000798715.1_202014-12-08] 5,935 sequences; 52,505,057 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq1477 141 8e-29 seq1135 122 8e-23 >seq1477 Length=21063 Score = 141 bits (156), Expect = 8e-29 Identities = 145/187 (78%), Gaps = 2/187 (1%) Strand=Plus/Minus Query 45131 CACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTC 45190 ||||| ||| || || ||||| || ||||| || || || | ||| ||| || Sbjct 16761 CACTAAATGAAGAGTGGATTCTTTCTGGATGTTGTAGTCTGATAAAGTTCGGCCATCCTC 16702 Query 45191 CAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTG 45250 | |||||||||||| |||| ||||| || |||||||| ||||| |||||||||||||| Sbjct 16701 AAGTTGTTTTCCTGCAAATATTAATCGCTGTTGGTCCGGAGGAATTCCTTCTTTATCTTG 16642 Query 45251 AATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTT 45309 |||||| ||||| || | || | |||||| |||||||||||||||||||||| |||| Sbjct 16641 AATTTTGCTTTTGA-CGTTATCAATGGTGTCAGAAGACTCGACTTCGAGAGTAATAGTTT 16583 Query 45310 TGCCGGT 45316 | ||||| Sbjct 16582 TACCGGT 16576 Score = 125 bits (138), Expect = 6e-24 Identities = 166/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 || ||||| || | | ||||| || || || ||||||||||| || || |||||| | Sbjct 17006 CCACCGCGAAGACGAAGCACTAAGTGGAGAGTCGATTCCTTTTGTATGTTGTAATCGTTA 16947 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | || ||| || | ||| ||||| || | ||||||| ||| |||||||| ||| Sbjct 16946 AGAGTACGTCCATCTTCAAGTTGCTTTCCAGCAAAGATCAATCTTTGTTGGTCCGGTGGA 16887 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGAC 45292 || |||||||||||||| || || ||||| || | |||| || || ||||| || || Sbjct 16886 ATACCTTCTTTATCTTGGATCTTACTTTTGA-CGTTGTCTATTGTATCTGAAGATTCTAC 16828 Query 45293 TTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||| ||||| | ||||| || || | ||||| ||||| || ||||| Sbjct 16827 TTCAAGAGTTATTGTTTTCCCAGTCAATGTTTTGACAAATATCTGCAT 16780 Score = 93.3 bits (102), Expect = 4e-14 Identities = 149/210 (71%), Gaps = 8/210 (4%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 ||||| ||||| | | | |||| || || || ||||| ||||| ||||| || ||| Sbjct 15942 ATTCCACCGCGTAAACGTAGGACTAAGTGAAGAGTGGATTCTTTTTGTATATTGTAGTCG 15883 Query 45171 CTGACGGTTTTAGA--ATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCG 45228 || || || | ||| ||||| || ||||| ||| | ||||||| || ||||| | Sbjct 15882 --GAAAGTGTTCGGCCATCCTCCAACTGCTTTCCAGCGAAAATCAATCTCTGTTGGTCTG 15825 Query 45229 GCGGAATGCCTTCTTTATCTTGAATTTT--TTGTTTGATCGCTTCTACGGTGTCGGAAGA 45286 | || ||||||||||| || |||||||| || || || | || | || || || || Sbjct 15824 GTGGGATGCCTTCTTTGTCCTGAATTTTGCTTTTTACATTG--TCGATAGTATCAGATGA 15767 Query 45287 CTCGACTTCGAGAGTAACCGTTTTGCCGGT 45316 |||||||| || || | |||||||| || Sbjct 15766 TTCGACTTCAAGGGTTATAGTTTTGCCAGT 15737 >seq1135 Length=44572 Score = 122 bits (134), Expect = 8e-23 Identities = 166/230 (72%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 45113 TCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCT 45172 |||||| || || | | || ||||| || || ||||| |||||||| || || || Sbjct 30904 TCCTCCACGAAGACGAAGTACGAGATGAAGAGTAGATTCTTTTTGGATGTTGTAGTCA-- 30847 Query 45173 GACGGTTTTAGAA--TCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 ||| | | | || || | ||||||||| || | ||||| ||||| ||||| || Sbjct 30846 GACAATGTCCGGCCGTCCTCGAGTTGTTTTCCCGCAAAAATCAAACGTTGTTGGTCAGGT 30787 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 ||||||||||| |||||||| |||||| ||| | || | |||||| || ||||| Sbjct 30786 GGAATGCCTTCCTTATCTTGGATTTTTGATTTTACATTGTCGATGGTGTCCGATGACTCC 30727 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || || |||| ||||| || || || ||||| || ||||||||||| Sbjct 30726 ACCTCAAGCGTAATAGTTTTACCCGTGAGGGTTTTCACGAAAATTTGCAT 30677 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451969667012600