Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Erysiphe_20necator_20[genbank_20GCA_5F000798715.1_202014-12-08] 5,935 sequences; 52,505,057 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq1878 114 1e-20 seq1135 105 7e-18 seq1477 98.7 1e-15 >seq1878 Length=35555 Score = 114 bits (126), Expect = 1e-20 Identities = 199/286 (70%), Gaps = 5/286 (2%) Strand=Plus/Minus Query 133167 GTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAA 133226 ||| || ||||| | |||||| |||| ||||| | || ||||| |||||||| Sbjct 22503 GTAAGTATCGATTAAAAGCGAATAAGTTTCAGAGTGGATATTTTCCATCATAATTTGAAA 22444 Query 133227 GCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAAC-GCTCGACCAGAT 133285 || |||||| | | ||||| | ||||||||| || |||| ||||||| || | Sbjct 22443 TCCATAAAAGAATCTAGCCTCAGGAATCTGCACTTCACT-GCTAAACCGCTCGACGAGGT 22385 Query 133286 TTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGC 133345 |||| || || || ||||| |||||| |||||||| ||||| || || || | | Sbjct 22384 TTTCATTAACAATCCCGTCTGAGGCGGCAAAAAAGGCTAGCACATGAGATATAAAGTATC 22325 Query 133346 GCTCGTTGTCGTTCAAGCGCTC---CCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCT 133402 | || | || || | || | ||| ||| | | || || |||| || | ||||| Sbjct 22324 GTTCATCATCATTGAGACGGTTATTCCAATCGTGGATATCTTTAGACAAATCAATCTCCT 22265 Query 133403 CGACGGTCCAAAACGACGCCTCGGCTTTTTTGTACATACTCCACAT 133448 | | |||||||| || ||||||||||||||||||||| ||| || Sbjct 22264 CAGCAGTCCAAAAAGATGCCTCGGCTTTTTTGTACATATGCCATAT 22219 >seq1135 Length=44572 Score = 105 bits (116), Expect = 7e-18 Identities = 153/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| ||||| |||||||| ||||| || || | || || ||| | | Sbjct 30677 ATGCAAATTTTCGTGAAAACCCTCACGGGTAAAACTATTACGCTTGAGGTGGAGTCATCG 30736 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | | ||| |||||||| || || || || ||||| | |||||| Sbjct 30737 GACACCATCGACAATGTAAAATCAAAAATCCAAGATAAGGAAGGCATTCCACCTGACCAA 30796 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 || || | |||| ||||| ||||| || || |||| || || | ||||||||| Sbjct 30797 CAACGTTTGATTTTTGCGGGAAAACAACTCGAGGACGGCCGGACATTGTCTGACTACAAC 30856 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 |||||||| ||| | || || ||| | || || ||| Sbjct 30857 ATCCAAAAAGAATCTACTCTTCATCTCGTACTTCGT 30892 >seq1477 Length=21063 Score = 98.7 bits (108), Expect = 1e-15 Identities = 138/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 38266 TCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCAAACGCTTAAAG 38325 |||| || ||||||||||| | || |||||| | | |||| | | | | | ||| Sbjct 16013 TCACTGGAAAAACCATCACTCTAGAGGTCGAGTCGTCTGACACCATCGACAATGTAAAAA 16072 Query 38326 AAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCA 38385 ||||| | |||||||| |||||||| |||| ||||| | || |||| || || | Sbjct 16073 GTAAAATACAAGACAAAGAAGGAATTCCACCCGATCAACAAAGACTAATTTTTGCTGGAA 16132 Query 38386 AACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGC 38445 |||| || || |||| || || || ||||| ||||||||||| ||| |||| || | Sbjct 16133 AACAACTTGAGGACGGTCGAACACTTTCTGACTATAACATCCAAAAAGAATCGACACTCC 16192 Query 38446 ATTTGGTGCTGCGT 38459 | ||||| || ||| Sbjct 16193 ACTTGGTCCTTCGT 16206 Score = 87.8 bits (96), Expect = 2e-12 Identities = 144/205 (70%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 38268 ACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCA-AACGCTTAAAGA 38326 || || ||||| || || |||| |||||| | | |||| | | | |||| |||| Sbjct 16576 ACCGGTAAAACTATTACTCTCGAAGTCGAGTCTTCTGACACCATTGATAACGTCAAAAGC 16635 Query 38327 AAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAA 38386 |||| || || ||||| |||||||| | ||||||||||| | || | || || || Sbjct 16636 AAAATTCAA-GATAAAGAAGGAATTCCTCCGGACCAACAGCGATTAATATTTGCAGGAAA 16694 Query 38387 ACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCA 38446 ||| || || || | || || | |||||||||||||| || ||| | || || || Sbjct 16695 ACAACTTGAGGATGGCCGAACTTTATCAGACTACAACATCCAGAAAGAATCCACTCTTCA 16754 Query 38447 TTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||| ||||| ||| | ||||| ||| Sbjct 16755 TTTAGTGCTTCGTCTAAGAGGAGGC 16779 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500135693430400