Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Erysiphe_20necator_20[genbank_20GCA_5F000798715.1_202014-12-08] 5,935 sequences; 52,505,057 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq643 383 2e-101 seq1878 199 4e-46 >seq643 Length=60608 Score = 383 bits (424), Expect = 2e-101 Identities = 665/963 (69%), Gaps = 14/963 (1%) Strand=Plus/Minus Query 47880 GCTATAGATGCTAGATTACATACAGCTACCTCATTTGGATTAGTATATTGTATTATTTCA 47939 |||| ||||| | |||||| ||||| || |||| ||| | |||| | ||||| Sbjct 38733 GCTAGGGATGCCAAATTACAAACAGCCACTTCATCCGGAGATGAGTATTCAACAATTTCG 38674 Query 47940 GCACATAGATTACCACATTTGATAGTACCCAAATTTTGATGATTATTNNNNTTGTTACAT 47999 | ||| |||||| | |||||| || | ||||| ||||| | || |||||| Sbjct 38673 GTACAAAGATTAGAGCTACGGATAGTCCCGAGATTTTTTTGATTGCTCTTTTTATTACAT 38614 Query 48000 GCGTCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCTATCTGAGATTCAATGATAGATTTC 48059 || || ||||| ||||||||||| || ||||||||| | || | ||| || || || | | Sbjct 38613 GCATCTTTGTAGAGCATAAAAGGGGTACCAGTTTCTGTTTGTGCTTCGATTATTGAGTAC 38554 Query 48060 CAAACAGTCCTAGCCTTTATAACAGCTCTAG---CTTTATTATCATGTTCGTATTTAGTA 48116 || | | ||| |||| || |||| |||| || ||||| || || | Sbjct 38553 CATAGCTTTTGTGCC---ATAATAGTTCTACGGCCTTTCCCTTCTTGTTCATACTTTTCA 38497 Query 48117 TATAACTTCTCAAATTCATCCCCATACACATTATCTAACCCAGGACATTCATTAGGACAC 48176 ||||| |||||||||||| |||||||||| | ||| |||||||||||| ||| ||| Sbjct 38496 TATAAAGCCTCAAATTCATCGCCATACACATCAGCTAGACCAGGACATTCACAAGGGCAC 38437 Query 48177 ATCAATGACCAATCCTCATCATTTTTTACTCTAGTCATAAATATATCTGGTATCCAAAGA 48236 |||| | ||| || ||| |||| ||||| ||||||| | ||| ||||||||||| Sbjct 38436 ATCAGGGTCCATTCACCATTTTTTTCAACTCTCTTCATAAAGAGATCAGGTATCCAAAGG 38377 Query 48237 GCTATA-AATAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCTTTTAAGTTCAAG 48295 || ||| |||| ||| | | | | |||||| ||||| ||| | || || || Sbjct 38376 GC-ATAGAATAGATCACGTGCACGAACTTCTTCTTTGCCGTGATTTTTGCGGAGGTCGAG 38318 Query 48296 AAAGTCCATTATATCAGCATGCCATGGTTCTAAATATATTGCCATTACACCTGGTCGTTT 48355 || || | |||||| || |||||||| || |||||||| || | | | || || || || Sbjct 38317 GAACTCAAATATATCGGCGTGCCATGGCTCCAAATATATAGCGAATGCTCCCGGACGCTT 38258 Query 48356 ATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAAT 48415 |||||| |||||||| | ||||||||||||||| || | |||| | ||| || ||||| Sbjct 38257 ATTACCACCTTGATCAACATATCTGGCAGTATTATTGAAGACTCGGAGCATCGGTACAAT 38198 Query 48416 ACCATTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTAT---ATTACT 48472 ||||||||| | ||||| ||||| | |||||| || | || | || || | | Sbjct 38197 ACCATTTGAGTTTCCATTTGTTCCTGCGATATAAGCACCTGTCGCGCGAATCCGATGAAT 38138 Query 48473 AATTGAAATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATC 48532 | || | || |||||||| || ||||||| || | ||| || ||| | ||||| Sbjct 38137 ATTT---AAGCCAATACCACCGGCATTTTTAGAAATCATAGCGCAAGTTTTCAAAGTATC 38081 Query 48533 ATAAATTCCTTCTATACTATCATCTATCATATTTAATAGAAAACAACTAGACATTTGCGG 48592 || ||||| || |||||||| ||| |||||| | || ||| || ||| | ||| | Sbjct 38080 GTAGATTCCATCAATACTATCCTCTTTCATATCAATTAAAAAGCATGAAGAGAGTTGAGA 38021 Query 48593 ATGACAAGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAA 48652 || ||| || | ||||| || || || ||||| |||| |||| | || | Sbjct 38020 TTGTGGAGTACCGGCTGCAAATAGAGTAGGGGAAGCATGCGTAAAGTATTTATTGGACAT 37961 Query 48653 CAATTTATATGTTTCAATAACAGAATCTATATCCCATTGATGTATACCTATAGATACACG 48712 | ||||| || || ||| |||| || || || ||| || || || | || ||||| Sbjct 37960 TAGATTATAAGTCTCTATAGCAGATTCAATGTCATCTTGGTGAATTCCAACAGCGACACG 37901 Query 48713 CATTAACATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGATTT 48772 ||||| ||||| ||| || | || |||||||| | ||| | | |||||||||| | Sbjct 37900 CATTATCATATGTTGTGGCCGCTCCACAATTTTATCATTGAGGCGAAGAAGATATGATCT 37841 Query 48773 TTCCAATGTTTTAAAACCAAAATAGTTGTATGAAAAGTCGTTATCATTAATAATTGATGA 48832 ||||| || || || |||||||| | ||| |||||| ||||| || || | || Sbjct 37840 TTCCAGAGTCTTGAAGCCAAAATACTGGTAATTAAAGTCTCGATCATAAACTATCGCGGA 37781 Query 48833 ATT 48835 ||| Sbjct 37780 ATT 37778 Score = 140 bits (154), Expect = 4e-28 Identities = 300/444 (68%), Gaps = 11/444 (2%) Strand=Plus/Minus Query 47013 GTTCGTAAATAATACATACCAGTCTTTAAACCTAAACTCCATCCATAGAAATGCATACTA 47072 || |||| || ||||| || || ||||| ||||| |||||||| ||||||||||| Sbjct 39609 GTACGTAGGTAGTACATGCCGGTTTTTAAGCCTAATTTCCATCCAGCAAAATGCATACTT 39550 Query 47073 GTTAATTTAGAATAACTAGGTTCTGAAATATGAATATTAAGAGATTGACTCTGATCAATA 47132 |||| ||| | | || ||| | |||||||| | || || |||||||||| Sbjct 39549 GTTATTTTGCCCATAGTTGGGTCTTTCAAGTGAATATTCATTGACTGTGACTGATCAATA 39490 Query 47133 AATGCACCTCTATCAGCTGCCATATCTAAAATAACCCTTTGTGGTATCTCCCATACTGTT 47192 |||||||| | |||||| ||||| | | || | |||| |||||||| |||||| Sbjct 39489 AATGCACCACGATCAGCAGCCATCTGAATTATGGTGCGCTGTGAGATCTCCCAAACTGTT 39430 Query 47193 TTATAAATTTGTTTAATGTCTTCTGGGAGATTAG---TATTTTGAATAGATCCTCCgttt 47249 || || | | |||||| || |||| | ||| | |||| |||||||| ||||| | Sbjct 39429 TTGTAGAGTGCTTTAATTTCGGCTGGAATATTTGATATATTCTGAATAGAGCCTCCATCA 39370 Query 47250 tctataattttgttttttaattcatttgacca-aag---ttttcgttcagttaatgtttt 47305 ||| || ||||| | | || ||||| ||| | || ||| || ||| Sbjct 39369 GATATGATGCGATTTTTCATGTTATCAGACCATAAGCCCATATCTACCAG---ATCTTTG 39313 Query 47306 taaAAGATGAGGATTAACAATTTGAAATTCTCCAGATAGTACTCTACGGCTATATATATT 47365 || | ||||| ||||||||||| ||||| | || || | || |||||||| Sbjct 39312 AGTAACCAG-GGATTTACAATTTGAAACTCTCCTGCTAAAACACGGCGTGAGTATATATT 39254 Query 47366 ACTTGTATATGGTTCTATAGATTCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGG 47425 | |||||||| || | | | |||||| ||||| ||||||| || ||| || || Sbjct 39253 AGAGGTATATGGCTCAAAACACTCATTAAATCCAAGAATTTGACTTGTACTTGCGGTTGG 39194 Query 47426 CATGGATGCAACTAATAAGCTATT 47449 ||| | || || | ||||||||| Sbjct 39193 CATTGGGGCTACGAGTAAGCTATT 39170 >seq1878 Length=35555 Score = 199 bits (220), Expect = 4e-46 Identities = 590/917 (64%), Gaps = 67/917 (7%) Strand=Plus/Minus Query 18657 CATTACTCCCATTTTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTC 18716 ||| ||||| |||||||| || | |||| |||||| || || ||||| || || | Sbjct 23127 CATCACTCCGGCCTTTTGATAGTCACCTACTCGTTTTTCGAAAAAGTTAGTCTTCCCAGC 23068 Query 18717 TAATGATATACATTCCATAAAATCAAATGGATTTTTTACATTATATAtttttttGAAT-- 18774 || || ||| |||||| ||||||||||||||||| || || |||| ||| |||| Sbjct 23067 CAAAGAGATATTTTCCATGAAATCAAATGGATTTTTGACTTTGTATACTTTG--GAATTT 23010 Query 18775 CCTAATTCTAATAGTAGTCTATCCGCTACAAATTTAATATATGTGTTCATCATATCACAA 18834 ||||| | || |||| ||| || || |||| || || ||||||| | Sbjct 23009 CCTAACGAGAGGAGAAGTCGATCTGCAACGAATTCGATGTACTGCTTCATCAGAGTGGCG 22950 Query 18835 TTCATTCCTATTAATTTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACT 18894 ||||| || | || || || || || || ||||||||||||||||| | || Sbjct 22949 TTCATGCCGAGTAGAGCGCATGGCAGCGCTTCAGTTAGAAATTCTTGTTCTATCTCGACG 22890 Query 18895 GCCTCTGATATAATAGATACAACTCTATCTTCATTAGGAGG---GTATAGAAGATGTTTA 18951 || | || |||| | ||| || | |||| || || | |||| | Sbjct 22889 GCTTGTGTGATAACATCCTGAACAGA--CTGC-TTAGATGGTCTGTGCTTCAAATGTGAA 22833 Query 18952 AACATCAAACATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAA 19011 || | | ||| ||||| || ||||| || ||||| | || | ||| |||||| Sbjct 22832 AAGAGGAGACAAGCAAAGTCCGTGTGTAGGCCTTCGTCACGTGAAATAAGTTCGTTAGAA 22773 Query 19012 AATGTTAAACCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCA 19071 || |||| |||| ||||| |||| ||| || ||||| || || |||||||| || ||| Sbjct 22772 AAGGTTAGGCCAGCCATCAACCCTCGTTTCTTCAACCAAAAAATGGAAGCAAAGGAACCA 22713 Query 19072 GAAAAGAATATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCA 19131 || ||||| || || ||||| |||||||| || || | || |||| | | | || Sbjct 22712 CTGAAAAATATTCCCTCCACTGCAGCAAAAGCTACAAGACGTTGTCCAAATGTCGACTCT 22653 Query 19132 TTATTATGAATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCA-------- 19183 || | |||||||| | ||||| |||| ||| || || | ||| || | Sbjct 22652 TTGTCTTGAATCCAACGGACGGCCCAGTCAGACTTTTTCTTAATACAAGGTACTATGAAT 22593 Query 19184 ----------------------------------------TTGTCTCTATAGAATTAAAT 19203 ||||||| |||| ||| || Sbjct 22592 CGTTAACGATTATCGCGATAGTGTGGGAAATGGGAATTACTTGTCTCGATAGCATTGAAA 22533 Query 19204 AGATACATACGCTCATCTGTATCTTTAACATATGCATCTATCAATAAACTGTACATTTCT 19263 ||||| | | | || |||||| | || | ||| || || | || |||| Sbjct 22532 AGATAAGTTTTTTGAGCTTGATCTTTTATGTAAGTATCGATTAAAAGCGAATAAGTTTCA 22473 Query 19264 GAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGT 19323 || || |||||||| || || |||||||| ||||| |||| || || | ||||| Sbjct 22472 GAGTGGATATTTTCCATCATAATTTGAAATCCATAAAAGAATCTAGCCTCAGGAATCTGC 22413 Query 19324 ACTTCACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAA 19383 |||||||| | ||| | ||||| | ||||||||||| || || || || |||||| Sbjct 22412 ACTTCACTGCTAAACCGCTCGACGAGGTTTTCATTAACAATCCCGTCTGAGGCGGCAAAA 22353 Query 19384 AATGCTAATACATGTTTAATAAAATGTTTTTCATC-----TGAGGTTAATGT-ATTCCAA 19437 || |||| ||||| ||||| | | |||||| |||| | || ||||||| Sbjct 22352 AAGGCTAGCACATGAGATATAAAGTATCGTTCATCATCATTGAG---ACGGTTATTCCAA 22296 Query 19438 TCATTAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTT 19497 || | ||||||||||| ||||| | || ||| | ||||||||||| ||||| |||||| Sbjct 22295 TCGTGGATATCTTTAGACAAATCAATCTCCTCAGCAGTCCAAAAAGATGCCTCGGCTTTT 22236 Query 19498 TTATACATGTTCCATAT 19514 || ||||| | |||||| Sbjct 22235 TTGTACATATGCCATAT 22219 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562067098553400