Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Erysiphe_20necator_20[genbank_20GCA_5F000798715.1_202014-12-08] 5,935 sequences; 52,505,057 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq643 174 5e-38 seq1878 131 5e-25 seq2412 107 6e-18 seq888 87.8 5e-12 >seq643 Length=60608 Score = 174 bits (192), Expect = 5e-38 Identities = 395/589 (67%), Gaps = 5/589 (1%) Strand=Plus/Minus Query 155915 CTCCATAAATACATCACTCGCCCAAATAGCATAGAAAAGGTCCCTTGCCTTTGACTCCTC 155974 || |||||| | |||| ||||| |||||||| || || | ||| || || Sbjct 38404 CTTCATAAAGAGATCAGGTATCCAAAGGGCATAGAATAGATCACGTGCACGAACTTCTTC 38345 Query 155975 ATCGCCGTGATTCTTCCGTAGCTCTAAGAATTCCTCAATATCAGGATGGTGTGGCTCCAG 156034 | ||||||||| || || || || | ||| || ||||| | || |||||||| Sbjct 38344 TTTGCCGTGATTTTTGCGGAGGTCGAGGAACTCAAATATATCGGCGTGCCATGGCTCCAA 38285 Query 156035 ATACATAGCAAAA-CTACC--ATTCCTCTTGCCACCCTGATCTACATACCGAGCAGTCTT 156091 ||| ||||| || || || | | | || ||||| ||||| ||||| | ||||| || Sbjct 38284 ATATATAGCGAATGCTCCCGGACGCTTATTACCACCTTGATCAACATATCTGGCAGTATT 38225 Query 156092 ATTGAAGACACCTAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCC-GCGAATAT 156150 ||||||||| | ||||| || | ||||||||| || | ||||| ||||| |||| ||| Sbjct 38224 ATTGAAGACTCGGAGCATCGGTACAATACCATTTGAGTTTCCATTTGTTCCTGCGA-TAT 38166 Query 156151 GCGAACCAGATGAGCGAACATTATGAATATGTAGTCCAATACCACCTGACCATTTAGAAA 156210 | ||| | | ||||| |||||||| || ||||||||||| | |||||||| Sbjct 38165 AAGCACCTGTCGCGCGAATCCGATGAATATTTAAGCCAATACCACCGGCATTTTTAGAAA 38106 Query 156211 TTTGAGCGCATTCCTTTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCATTGATA 156270 | |||||| || | ||||| | | || || |||||| ||| |||| ||| | Sbjct 38105 TCATAGCGCAAGTTTTCAAAGTATCGTAGATTCCATCAATACTATCCTCTTTCATATCAA 38046 Query 156271 GTAGATAGCACGAACTTAATTGAGGTCGTGGTGTTCCAGCGTTGAATAGTGTAGGTGTTG 156330 || | |||| ||| | ||||| | |||| || || || ||||| ||||| | | Sbjct 38045 TTAAAAAGCATGAAGAGAGTTGAGATTGTGGAGTACCGGCTGCAAATAGAGTAGGGGAAG 37986 Query 156331 CATGAATAAAATACTTATTAGACATATAATCGTATGTCTCCTTAATCTTCTCAAGATTAG 156390 |||| |||| || ||||| ||||| || || ||||| || |||| | | Sbjct 37985 CATGCGTAAAGTATTTATTGGACATTAGATTATAAGTCTCTATAGCAGATTCAATGTCAT 37926 Query 156391 ACCCGTGAATACAGATAGAGACCCTCATCCACATATGCTGAGGACGCTCTACAATCACTC 156450 |||||| | | || ||| | ||| |||||| || || ||||| ||||| Sbjct 37925 CTTGGTGAATTCCAACAGCGACACGCATTATCATATGTTGTGGCCGCTCCACAATTTTAT 37866 Query 156451 CATCAATTCGCAGAAGGTATGCGCGTTCCAGAGTTTTAAACCCGAAATA 156499 ||| | || ||||| |||| | ||||||||| || || || ||||| Sbjct 37865 CATTGAGGCGAAGAAGATATGATCTTTCCAGAGTCTTGAAGCCAAAATA 37817 >seq1878 Length=35555 Score = 131 bits (144), Expect = 5e-25 Identities = 164/220 (75%), Gaps = 4/220 (2%) Strand=Plus/Plus Query 133439 CCTTGTATTAAAAAGAAATCTGACTGGGCTATTAAATGGATCCAGGAC-AAGCGTGCGAG 133497 ||||||||||| || || ||||||||||| | ||||| || ||| ||| || ||| Sbjct 22603 CCTTGTATTAAGAAAAAGTCTGACTGGGCCGTCCGTTGGATTCAAGACAAAGAGT-CGAC 22661 Query 133498 TTTTGCTACTCGTCTCGTTGCTTTTGCTGTAGTAGAGGGCAtttttttCAGTGGTGCGTT 133557 |||| ||||| || |||||||||| ||| ||||| || |||||||||||| | || Sbjct 22662 ATTTGGACAACGTCTTGTAGCTTTTGCTGCAGTGGAGGGAATATTTTTCAGTGGTTCCTT 22721 Query 133558 CTGC-TCTATTTTTTGGCTTAAAAAGCGTGGTATTCTACCTGGACTGTGTTTTTCTAACG 133616 ||| || ||||||||| | || || || || | | |||| || |||||||||| Sbjct 22722 -TGCTTCCATTTTTTGGTTGAAGAAACGAGGGTTGATGGCTGGCCTAACCTTTTCTAACG 22780 Query 133617 AACTTATTTCAAGGGACGAGGCACTTCACACCGAATTTGC 133656 ||||||||||| | ||||| | || ||||| || ||||| Sbjct 22781 AACTTATTTCACGTGACGAAGGCCTACACACGGACTTTGC 22820 >seq2412 Length=21009 Score = 107 bits (118), Expect = 6e-18 Identities = 328/502 (65%), Gaps = 4/502 (1%) Strand=Plus/Minus Query 288850 CTATCAAACCTACCAGAACGAGTTAATGCTGGGTCTAATATATCGGCTCTGTTTGTTGCT 288909 |||||||| | ||| | ||| |||| ||| || | || ||| | ||| || || || Sbjct 11989 CTATCAAATCGACCGGGACGCATTAAAGCTTTATCAAGTACATCTGGTCTATTAGTGCCT 11930 Query 288910 GCCAATACAACAATAGATTCGGTTTGCTTAAATCCATCCATACTTGTTAAAATTTGATTA 288969 || | ||||||| || | || ||||||||||| ||||| || ||||| Sbjct 11929 GCGAGAACAACAACTTGCTCAGAGGTATTGAATCCATCCATTTCAGTTAATATCTGATTT 11870 Query 288970 AGTGTTTGTTCCCTTTCATCATTTGAACCTCTTGAATCACCCGAA-TCGCTCCttttttt 289028 | || || |||||||||||| ||| | ||| |||| | |||| | ||| Sbjct 11869 AAGGTAGCCTCTCTTTCATCATTTCCACCACCA-AATGACCCAACCTCGCCGCGAGATTT 11811 Query 289029 ACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATTGC 289088 |||| ||||| ||||| || || ||||| | ||| || | |||| | || ||| Sbjct 11810 GCCAATGGCATCGATTTCATCTATAAAAATAATACATGGTGTGTTTTTACGAGCTTCTGC 11751 Query 289089 AAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAGC 289148 || | || | || || || || || | |||||| |||| |||||||||||||| | Sbjct 11750 GAAAAGATCGCGAACTCGTGAGGCACCGACGCCAACAAACATCTCTACAAATTCAGATCC 11691 Query 289149 GGATAC-TTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCT 289207 ||| |||| ||||| ||| | || |||||||| || | || | |||||| | Sbjct 11690 ACTTACACTGAA-GAATGGTACTTGTGACTCGCCTGCCGTAGCTTTAGCTAAAAGTGTTT 11632 Query 289208 TACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCCAGCAGACT 289267 | || ||||| |||||||| | | | | || ||||| ||| || || | || Sbjct 11631 TCCCAGTTCCTGGTGGTCCGGAAAGAATAGCACCACGTGGTATTTTGGCACCGAGACGCT 11572 Query 289268 TATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTTGCCTCAT 289327 || |||| || |||| | || |||| |||| | ||| |||||| |||| Sbjct 11571 CGAATGTCTCCGGTGTCTTCAGGAACGAAACAAATTCCATGATTTCTAGTTTTGCTTCAT 11512 Query 289328 CACATCCTGCTACATCAGCAAA 289349 | |||||| ||||| ||||| Sbjct 11511 CCATTCCTGCAACATCGGCAAA 11490 >seq888 Length=40082 Score = 87.8 bits (96), Expect = 5e-12 Identities = 143/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 302599 TGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACCC 302658 |||||||| ||||| || ||||| |||||||| ||||||||||| | ||||| || Sbjct 28041 TGAATATATCCAGTCTCAGCAGTTTTGACAGCTGTGTCAATTAGACCTTCTCGACCGGCC 27982 Query 302659 ATAGCATGGAAGAATAGCTCTTCCGGTCGTAGCCCCCCAATAAAGGAGCTCTCAACGAAA 302718 ||||| |||||||| | || ||| || || | || | | || | ||||| || Sbjct 27981 ATAGCGTGGAAGAAAAATTCAGTAGGTGTGAGACCGCGAAGATAAGAATTTTCAACAAAT 27922 Query 302719 CCACGCGCCTCGGGCGAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTCTCATAG 302778 || || | || || || | ||| || ||||| ||||| | ||| | | | | | Sbjct 27921 CCGCGTGATTCAGGAGAGTAATCGTCTTTTGTAAAATGTGGTAAGGTTCGATATTTAAAT 27862 Query 302779 CCGTATGGGATACGCTTTCCATCAAC 302804 ||| ||||||| ||||| || ||||| Sbjct 27861 CCGAATGGGATTCGCTTCCCTTCAAC 27836 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471705679770095