Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Erysiphe_20necator_20[genbank_20GCA_5F000798715.1_202014-12-08] 5,935 sequences; 52,505,057 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq643 167 3e-36 seq2412 89.7 6e-13 >seq643 Length=60608 Score = 167 bits (184), Expect = 3e-36 Identities = 550/843 (65%), Gaps = 33/843 (4%) Strand=Plus/Minus Query 110968 TGCGTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTTCATCTGAATCAAA 111027 ||| ||||| |||||||||||||| | || | | || || || || || || Sbjct 39001 TGCATGATATATGGTTTCAAAGATCTGTTTGTTGAGATGTTTTGCCTCTGGAGAGTCGAA 38942 Query 111028 TGCGTAGCGGCACAAA---ATAAATACATCCGCGAGACCTTGAACACCCAAACCAATAGG 111084 || |||| |||| | ||| ||||| || || |||||||| |||| | | || || Sbjct 38941 TGGCAAGCG---CAAAGCCAAAAACACATCTGCTAGCCCTTGAACTCCCACAGCTATTGG 38885 Query 111085 TCTGTGTCGCATATTAGACTTTCGCGCAGTCTCA---ACGGGATAAAAATTTCTGTCAAT 111141 || ||| || | ||| ||| || || ||| || ||||| |||| ||||| Sbjct 38884 TCGGTGGCGTAAATTGCTCTTACGAGCT---TCAGGCACAGGATAGTAATTAACATCAAT 38828 Query 111142 GACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCATGAAGTTTTTCATAATCAAA 111201 || | || ||||| | |||| || || ||||||||||| | | ||||||| Sbjct 38827 GATTTTATTCAGATTCCTAACTACAACCTGACAGACATCATGAAGTTTGTGAAAATCAAA 38768 Query 111202 AGTGCGAGTCTCTTCATTGACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGC 111261 ||| | || ||| ||||| | || | || | ||||||||||| |||||||| Sbjct 38767 AGTATTATCAGCTGTATTAACATAGGTCGGCAAAGCTAGGGATGCCAAATTACAAACAGC 38708 Query 111262 CGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACATAAGTTGGAACTCTTAATCGT 111321 | |||||| | || ||| || | |||||| ||||| | || || || || || Sbjct 38707 CACTTCATCCGGAGATGAGTATTCAACAATTTCGGTACAAAGATTAGAGCTACGGATAGT 38648 Query 111322 CCCCAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGT 111381 ||| | ||| ||||| || ||||| || || || ||||| ||||||||||| | || || Sbjct 38647 CCCGAGATTTTTTTGATTGCTCTTTTTATTACATGCATCTTTGTAGAGCATAAAAGGGGT 38588 Query 111382 CCCCGTCTCCGTCTGTGATTTGAGAATAGCCTTCCA-AACATCGGCGGCTGGTACAATGG 111440 || || || || |||| || || || | | ||| | | | | || | ||| | Sbjct 38587 ACCAGTTTCTGTTTGTGCTTCGATTATTGAGTACCATAGCTTTTG----TGCCATAATAG 38532 Query 111441 --CGTTGGCCCGTCCC-TCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCA 111497 | |||| |||| || || |||||| || | || ||||| || || || Sbjct 38531 TTCTACGGCCTTTCCCTTCTTGTTCATACTTTTCATATAAAGCCTCAAATTCATCGCCAT 38472 Query 111498 CCGCGTCGGAGAGACCTGGTGCCTTGTC-TGGACAGAAAAGAGACCATTGACCACCTTCC 111556 | | || | ||||| || | || | || || | || | ||||| |||| || Sbjct 38471 ACACATCAGCTAGACCAGG-ACATTCACAAGGGCACATCAGGGTCCATTCACCATTTTTT 38413 Query 111557 TCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAGAGATCTC-TACACCG 111615 ||||| | |||||| || || || || ||||| |||| | || ||||| | | || || Sbjct 38412 TCAACTCTCTTCATAAAGAGATCAGGTATCCAAAGGGCATAGAATAGATCACGTGCA-CG 38354 Query 111616 AGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCCATGATATCCGCGTGCCA 111675 | | ||||| | || || || || | || |||||||| | ||||| |||||||| Sbjct 38353 AACTTCTTCTTTGCCGTGATTTTTGCGGAGGTCGAGGAACTCAAATATATCGGCGTGCCA 38294 Query 111676 TGGCTCAAGATAGACTGCGATAGATCCCTTTCGACGC------CCAGCTTGATTTACATA 111729 |||||| | ||| | |||| | |||| ||||| ||| |||||| ||||| Sbjct 38293 TGGCTCCAAATATATAGCGAATGCTCCC---GGACGCTTATTACCACCTTGATCAACATA 38237 Query 111730 GCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGATTGACCATTTGT 111789 | || || || || || || ||||| || | |||||||| ||| | |||||||| Sbjct 38236 TCTGGCAGTATTATTGAAGACTCGGAGCATCGGTACAATACCATTTGAGTTTCCATTTGT 38177 Query 111790 CCC 111792 || Sbjct 38176 TCC 38174 >seq2412 Length=21009 Score = 89.7 bits (98), Expect = 6e-13 Identities = 271/412 (66%), Gaps = 14/412 (3%) Strand=Plus/Minus Query 11452 ATCAAAACGACCCGGGCGAAGGAGGGCGTCATCAAGGATATCCACGCGATTAGTGGCCGC 11511 |||||| ||||| || || | | || | |||||| | ||| | ||||||| | || Sbjct 11987 ATCAAATCGACCGGGACGCATTAAAGCTTTATCAAGTACATCTGGTCTATTAGTGCCTGC 11928 Query 11512 AATAACCACAA--TGC-CAGTCTCATTGTCAAAGCCATCCATCTCGGTGAGTAATTGATT 11568 | ||| |||| ||| ||| |||| || |||||||| || || | || ||||| Sbjct 11927 GAGAACAACAACTTGCTCAGAGGTATTG---AATCCATCCATTTCAGTTAATATCTGATT 11871 Query 11569 AATTGTTTGTTCTCTCTCATCATTTGCTGG--CATA----CCACCAGCACTGCGTTGCTT 11622 | || ||||| ||||||||| | || | ||| | | | ||| || Sbjct 11870 TAAGGTAGCCTCTCTTTCATCATTTCCACCACCAAATGACCCAACCTCGCCGCGAGATTT 11811 Query 11623 GCCCACCGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTC 11682 ||| | ||||| || ||||| || || | |||||||||| |||| || || | | Sbjct 11810 GCCAATGGCATCGATTTCATCTATAAAAATAATACATGGTGTGTTTTTACGAGCTTCTGC 11751 Query 11683 AAAGAGATCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGTTTGCGGC 11742 || ||||||||||| | | |||||| || |||||||||||||| ||||| | | | Sbjct 11750 GAAAAGATCGCGAACTCGTGAGGCACCGACGCCAACAAACATCTCTACAAATTCAGATCC 11691 Query 11743 A-GAGCACTGGATGAATGGGACATTTGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCT 11801 | |||| || |||||| || | ||| || || || | ||| || | || || | Sbjct 11690 ACTTACACT-GAAGAATGGTACTTGTGACTCGCCTGCCGTAGCTTTAGCTAAAAGTGTTT 11632 Query 11802 TTCCCGTACCTGGCTTACCCGCGAGAAGGGCGCCTCGGGGGATCTTGGCACC 11853 | || || ||||| || | |||| || || || || || |||||||| Sbjct 11631 TCCCAGTTCCTGGTGGTCCGGAAAGAATAGCACCACGTGGTATTTTGGCACC 11580 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627985407876000