Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Erysiphe_20necator_20[genbank_20GCA_5F000798715.1_202014-12-08] 5,935 sequences; 52,505,057 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq1135 150 2e-31 seq1477 149 7e-31 seq849 113 5e-20 >seq1135 Length=44572 Score = 150 bits (166), Expect = 2e-31 Identities = 172/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 27403 ATAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCA 27462 || |||||||| || || || || || || || || |||||||| |||||||| |||||| Sbjct 30674 ATCATGCAAATTTTCGTGAAAACCCTCACGGGTAAAACTATTACGCTTGAGGTGGAGTCA 30733 Query 27463 GGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGAC 27522 || | ||| | ||| | || | ||||| || || ||||| || ||||| || ||| Sbjct 30734 TCGGACACCATCGACAATGTAAAATCAAAAATCCAAGATAAGGAAGGCATTCCACCTGAC 30793 Query 27523 CAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTAT 27582 || || ||| | |||||||| || || ||||||||||| | || || | | ||||| Sbjct 30794 CAACAACGTTTGATTTTTGCGGGAAAACAACTCGAGGACGGCCGGACATTGTCTGACTAC 30853 Query 27583 AATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGA 27633 || ||||||| ||||| ||||||||||| || | |||||||| || ||| Sbjct 30854 AACATCCAAAAAGAATCTACTCTTCATCTCGTACTTCGTCTTCGTGGAGGA 30904 >seq1477 Length=21063 Score = 149 bits (164), Expect = 7e-31 Identities = 156/205 (76%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 27428 TTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGG 27487 |||| || || || ||||| |||||||| |||||| || | ||||| ||| |||| Sbjct 16289 TTACTGGTAAAACCATTACCCTTGAGGTAGAGTCATCCGACACCATTGATAATGTGAAAA 16348 Query 27488 CTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTA 27547 |||||| ||||||||||| |||||||| || || || || | |||| |||||||| | Sbjct 16349 GTAAAATACAGGACAAGGAAGGAATTCCACCCGATCAACAAAGATTAATCTTTGCTGGCA 16408 Query 27548 AGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTC 27607 | ||||| ||||||| ||| || || | || || || | ||||| ||||| || |||| Sbjct 16409 AACAACTTGAGGATGGTCGAACATTATCTGATTACAACATTCAAAAAGAATCTACCCTTC 16468 Query 27608 ATCTAGTCTTGCGTCTTCGCGGTGG 27632 ||||||| | |||||||| ||||| Sbjct 16469 ATCTAGTTCTCCGTCTTCGTGGTGG 16493 Score = 141 bits (156), Expect = 1e-28 Identities = 149/196 (76%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 27428 TTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGG 27487 ||||||| || ||||||||||| || || ||||| ||| | ||||| || | || Sbjct 16574 TTACCGGTAAAACTATTACTCTCGAAGTCGAGTCTTCTGACACCATTGATAACGTCAAAA 16633 Query 27488 CTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTA 27547 |||||||| || || || ||||||||||| ||||| ||||| |||| ||||| || | Sbjct 16634 GCAAAATTCAAGATAAAGAAGGAATTCCTCCGGACCAACAGCGATTAATATTTGCAGGAA 16693 Query 27548 AGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTC 27607 | ||||| ||||||| || || || ||||||| || |||| || ||||||||||||| Sbjct 16694 AACAACTTGAGGATGGCCGAACTTTATCAGACTACAACATCCAGAAAGAATCCACTCTTC 16753 Query 27608 ATCTAGTCTTGCGTCT 27623 || |||| | ||||| Sbjct 16754 ATTTAGTGCTTCGTCT 16769 Score = 138 bits (152), Expect = 1e-27 Identities = 154/206 (75%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 27428 TTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGG 27487 |||| ||||| ||||| || ||||| || || ||| ||||| || | ||| | || Sbjct 15735 TTACTGGCAAAACTATAACCCTTGAAGTCGAATCATCTGATACTATCGACAATGTAAAAA 15794 Query 27488 CTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTA 27547 |||||||||||||| || || || || |||||||| ||| | | ||||| ||||| | Sbjct 15795 GCAAAATTCAGGACAAAGAAGGCATCCCACCAGACCAACAGAGATTGATTTTCGCTGGAA 15854 Query 27548 AGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTC 27607 |||| | ||||||| || || || | ||||| ||| | ||||| ||||||||||||| Sbjct 15855 AGCAGTTGGAGGATGGCCGAACACTTTCCGACTACAATATACAAAAAGAATCCACTCTTC 15914 Query 27608 ATCTAGTCTTGCGTCTTCGCGGTGGA 27633 | ||||| | ||| | ||||||||| Sbjct 15915 ACTTAGTCCTACGTTTACGCGGTGGA 15940 Score = 127 bits (140), Expect = 2e-24 Identities = 150/203 (74%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 27430 ACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCT 27489 || || || || || ||||| ||||| ||||| ||| | ||| | ||| | || | Sbjct 16015 ACTGGAAAAACCATCACTCTAGAGGTCGAGTCGTCTGACACCATCGACAATGTAAAAAGT 16074 Query 27490 AAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAG 27549 ||||| || ||||| || |||||||| || || || || | |||||||||||||| || Sbjct 16075 AAAATACAAGACAAAGAAGGAATTCCACCCGATCAACAAAGACTAATTTTTGCTGGAAAA 16134 Query 27550 CAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCAT 27609 ||||| ||||| | ||| || || | |||||||| ||||||| ||||| || || || Sbjct 16135 CAACTTGAGGACGGTCGAACACTTTCTGACTATAACATCCAAAAAGAATCGACACTCCAC 16194 Query 27610 CTAGTCTTGCGTCTTCGCGGTGG 27632 | ||| | |||||||| ||||| Sbjct 16195 TTGGTCCTTCGTCTTCGTGGTGG 16217 Score = 109 bits (120), Expect = 6e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || |||||||| || | || || || || || |||||||| || || || Sbjct 16780 ATGCAGATATTTGTCAAAACATTGACTGGGAAAACAATAACTCTTGAAGTAGAATCTTCA 16839 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| || | || | || ||| || || || || || || ||||| || ||||| Sbjct 16840 GATACAATAGACAACGTCAAAAGTAAGATCCAAGATAAAGAAGGTATTCCACCGGACCAA 16899 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || | | || |||||||| |||||||| || |||| ||||| || || || || Sbjct 16900 CAAAGATTGATCTTTGCTGGAAAGCAACTTGAAGATGGACGTACTCTTAACGATTACAAC 16959 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACA 27635 | ||||||||||| ||||| || |||| | |||||||||||||| || Sbjct 16960 ATACAAAAGGAATCGACTCTCCACTTAGTGCTTCGTCTTCGCGGTGGTCA 17009 >seq849 Length=64135 Score = 113 bits (124), Expect = 5e-20 Identities = 134/182 (74%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 27414 CTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCAT 27473 ||| |||||||| || || ||||| ||||| || | ||||||||||| ||| | || Sbjct 59894 CTTCGTCAAGACCCTAACTGGCAAAACTATCACCTTAGAGGTTGAGTCCTCTGACACAAT 59835 Query 27474 TGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCT 27533 || ||| |||| || || || ||||| || |||||||| || || || || || ||| | Sbjct 59834 TGATAATGTGAAAGCAAAGATCCAGGATAAAGAGGGAATCCCCCCTGATCAACAACGTTT 59775 Query 27534 AATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAA 27593 || ||||||||||| || || || |||| || || || | || || ||| | ||||| Sbjct 59774 GATATTTGCTGGTAAACAGCTTGAAGATGGACGAACTCTTTCTGATTACAATATTCAAAA 59715 Query 27594 GG 27595 || Sbjct 59714 GG 59713 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570268090097200