Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Erysiphe_20necator_20[genbank_20GCA_5F000798715.1_202014-12-08] 5,935 sequences; 52,505,057 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq1477 129 4e-25 >seq1477 Length=21063 Score = 129 bits (142), Expect = 4e-25 Identities = 153/205 (75%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 ||| ||||| ||||| | ||| ||||| |||||| || || || ||||| || ||||| Sbjct 16779 GCCTCCTCTTAGACGAAGCACTAAATGAAGAGTGGATTCTTTCTGGATGTTGTAGTCTGA 16720 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 | ||||| | || ||||||||||| || ||||||||||| |||||||||||||| || Sbjct 16719 TAAAGTTCGGCCATCCTCAAGTTGTTTTCCTGCAAATATTAATCGCTGTTGGTCCGGAGG 16660 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATA-AAATTGTGTCTTCGCTCTCCA 34657 | ||| || || ||| ||| ||| |||| ||| || ||| ||||| ||| | Sbjct 16659 AATTCCTTCTTTATCT-TGAATTTTGCTTTTGACGTTATCAATGGTGTCAGAAGACTCGA 16601 Query 34658 CTTCCACGGTTATCGTTTTACCGGT 34682 |||| | || || ||||||||||| Sbjct 16600 CTTCGAGAGTAATAGTTTTACCGGT 16576 Score = 113 bits (124), Expect = 3e-20 Identities = 164/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | |||||| | ||| || |||||||| |||||||| ||||| ||||| | Sbjct 17006 CCACCGCGAAGACGAAGCACTAAGTGGAGAGTCGATTCCTTTTGTATGTTGTAATCGTTA 16947 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || | ||||||||||| || || ||||| || || | ||||||||||| || Sbjct 16946 AGAGTACGTCCATCTTCAAGTTGCTTTCCAGCAAAGATCAATCTTTGTTGGTCCGGTGGA 16887 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | || || || ||| |||| || |||| ||| | ||||| ||| || || Sbjct 16886 ATACCTTCTTTATCTTGGATC-TTACTTTTGACGTTGTCTATTGTATCTGAAGATTCTAC 16828 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 ||| | ||||| ||||| || || || ||||| ||||| ||||||||| Sbjct 16827 TTCAAGAGTTATTGTTTTCCCAGTCAATGTTTTGACAAATATCTGCATG 16779 Score = 96.9 bits (106), Expect = 2e-15 Identities = 103/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 ||| || | |||||| | ||||| ||||| || || ||||| |||||||| || || Sbjct 16218 GCCACCACGAAGACGAAGGACCAAGTGGAGTGTCGATTCTTTTTGGATGTTATAGTCAGA 16159 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 ||||||||| |||| ||||||||||| || ||||| |||| | ||||| || || || Sbjct 16158 AAGTGTTCGACCGTCCTCAAGTTGTTTTCCAGCAAAAATTAGTCTTTGTTGATCGGGTGG 16099 Query 34599 CACTCCCTCCTTGTCT 34614 | ||| || |||||| Sbjct 16098 AATTCCTTCTTTGTCT 16083 Score = 89.7 bits (98), Expect = 3e-13 Identities = 146/205 (71%), Gaps = 4/205 (2%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | |||||| | || | ||| || || || ||||||||||| ||||| || Sbjct 16493 CCACCACGAAGACGGAGAACTAGATGAAGGGTAGATTCTTTTTGAATGTTGTAATCAGAT 16434 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | |||||| | || ||||||||||| || ||||| ||||| | ||||| || || || Sbjct 16433 AATGTTCGACCATCCTCAAGTTGTTTGCCAGCAAAGATTAATCTTTGTTGATCGGGTGGA 16374 Query 34600 ACTCCCTCCTTGT-CTGTGATCTTTTGTTTTAACGATA-AAATTGTGTCTTCGCTCTCCA 34657 | ||| ||||||| |||| || ||| |||| || || ||| ||||| ||| | Sbjct 16373 ATTCCTTCCTTGTCCTGT-AT-TTTACTTTTCACATTATCAATGGTGTCGGATGACTCTA 16316 Query 34658 CTTCCACGGTTATCGTTTTACCGGT 34682 | || | ||| || |||||||| || Sbjct 16315 CCTCAAGGGTAATGGTTTTACCAGT 16291 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314706834722855