Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Erysiphe_20necator_20[genbank_20GCA_5F000798715.1_202014-12-08] 5,935 sequences; 52,505,057 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq1135 136 9e-27 seq1477 131 4e-25 seq849 125 2e-23 >seq1135 Length=44572 Score = 136 bits (150), Expect = 9e-27 Identities = 165/225 (73%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 210890 TCAACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAG 210949 || |||||| | || || || |||||||| || |||||||||||||| || || | | Sbjct 30901 TCCACGAAGACGAAGTACGAGATGAAGAGTAGATTCTTTTTGGATGTTGTAGTCAGACAA 30842 Query 210950 GGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAAC 211009 |||| || || || || || || || || || || | |||||||||||||| |||| Sbjct 30841 TGTCCGGCCGTCCTCGAGTTGTTTTCCCGCAAAAATCAAACGTTGTTGGTCAGGTGGAAT 30782 Query 211010 TCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTC 211069 |||||||| || ||||| ||| ||| || || ||||||||||| || || ||||| Sbjct 30781 GCCTTCCTTATCTTGGATTTTTGATTTTACATTGTCGATGGTGTCCGATGACTCCACCTC 30722 Query 211070 GAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || || || |||||||| || || || || | ||||| Sbjct 30721 AAGCGTAATAGTTTTACCCGTGAGGGTTTTCACGAAAATTTGCAT 30677 >seq1477 Length=21063 Score = 131 bits (144), Expect = 4e-25 Identities = 149/200 (75%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | ||||| | ||| || || || ||||||||||||||||| || | ||| || Sbjct 16212 ACGAAGACGAAGGACCAAGTGGAGTGTCGATTCTTTTTGGATGTTATAGTCAGAAAGTGT 16153 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | || || || || || || || || || || || | |||||| || || |||| ||| Sbjct 16152 TCGACCGTCCTCAAGTTGTTTTCCAGCAAAAATTAGTCTTTGTTGATCGGGTGGAATTCC 16093 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 ||| ||||| || || || ||| || || |||||||||||||| || ||||| || Sbjct 16092 TTCTTTGTCTTGTATTTTACTTTTTACATTGTCGATGGTGTCAGACGACTCGACCTCTAG 16033 Query 211073 AGTGATCGTCTTTCCCGTGA 211092 |||||| || ||||| |||| Sbjct 16032 AGTGATGGTTTTTCCAGTGA 16013 Score = 114 bits (126), Expect = 3e-20 Identities = 144/198 (73%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | || || || ||||| || || |||||||| ||||| ||||| | | || Sbjct 16488 ACGAAGACGGAGAACTAGATGAAGGGTAGATTCTTTTTGAATGTTGTAATCAGATAATGT 16429 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | ||||| || || || ||||| || ||||| | | |||||| || || |||| ||| Sbjct 16428 TCGACCATCCTCAAGTTGTTTGCCAGCAAAGATTAATCTTTGTTGATCGGGTGGAATTCC 16369 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 |||||||||||| || || |||||| || || |||||||| || || ||||| || Sbjct 16368 TTCCTTGTCCTGTATTTTACTTTTCACATTATCAATGGTGTCGGATGACTCTACCTCAAG 16309 Query 211073 AGTGATCGTCTTTCCCGT 211090 || || || || || || Sbjct 16308 GGTAATGGTTTTACCAGT 16291 Score = 111 bits (122), Expect = 4e-19 Identities = 138/189 (73%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 210902 TAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATC 210961 |||||| | |||||||||||| |||||||| || || || || | ||| || | ||||| Sbjct 15925 TAGGACTAAGTGAAGAGTGGATTCTTTTTGTATATTGTAGTCGGAAAGTGTTCGGCCATC 15866 Query 210962 TTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTC 211021 |||| |||||| || ||||| || | | |||||||| || || | ||||| ||||| Sbjct 15865 CTCCAACTGCTTTCCAGCGAAAATCAATCTCTGTTGGTCTGGTGGGATGCCTTCTTTGTC 15806 Query 211022 CTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGT 211081 ||| || || ||| || || ||||| || ||||| ||| || || || || || || Sbjct 15805 CTGAATTTTGCTTTTTACATTGTCGATAGTATCAGATGATTCGACTTCAAGGGTTATAGT 15746 Query 211082 CTTTCCCGT 211090 || || || Sbjct 15745 TTTGCCAGT 15737 Score = 111 bits (122), Expect = 4e-19 Identities = 132/179 (74%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 210912 TGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGC 210971 ||||||||||| ||||| |||||||| || || | | || | ||||| || || || Sbjct 16754 TGAAGAGTGGATTCTTTCTGGATGTTGTAGTCTGATAAAGTTCGGCCATCCTCAAGTTGT 16695 Query 210972 TTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTT 211031 || ||||| || || | || |||||||| ||||||| |||||| || || || || || Sbjct 16694 TTTCCTGCAAATATTAATCGCTGTTGGTCCGGAGGAATTCCTTCTTTATCTTGAATTTTG 16635 Query 211032 TGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGT 211090 ||| ||||| || ||||||||||| || || |||||||| || || || || || Sbjct 16634 CTTTTGACGTTATCAATGGTGTCAGAAGACTCGACTTCGAGAGTAATAGTTTTACCGGT 16576 >seq849 Length=64135 Score = 125 bits (138), Expect = 2e-23 Identities = 135/179 (75%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 210927 TTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATA 210986 ||||| || || ||||| | ||| || | ||||||||| ||||| || || || || || Sbjct 59715 TTTTGAATATTGTAATCAGAAAGAGTTCGTCCATCTTCAAGCTGTTTACCAGCAAATATC 59774 Query 210987 AGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCG 211046 | |||||||| ||||| || | ||| || || |||||||||||| |||||| || || Sbjct 59775 AAACGTTGTTGATCAGGGGGGATTCCCTCTTTATCCTGGATCTTTGCTTTCACATTATCA 59834 Query 211047 ATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAA 211105 || ||||||||| |||||||| | ||||| || || || || || ||||| || || Sbjct 59835 ATTGTGTCAGAGGACTCAACCTCTAAGGTGATAGTTTTGCCAGTTAGGGTCTTGACGAA 59893 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159063855546275