Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Erysiphe_20necator_20[genbank_20GCA_5F000798715.1_202014-12-08] 5,935 sequences; 52,505,057 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq1135 131 4e-25 seq1477 127 5e-24 seq643 86.0 1e-11 >seq1135 Length=44572 Score = 131 bits (144), Expect = 4e-25 Identities = 156/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || || |||||||||||||| ||||||||||||||||| || | || || | || || Sbjct 30888 AGTACGAGATGAAGAGTAGATTCTTTTTGGATGTTGTAGTCAGACAATGTCCGGCCGTCC 30829 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || ||| || || || || | | || ||||| | | || |||||||| ||| Sbjct 30828 TCGAGTTGTTTTCCCGCAAAAATCAAACGTTGTTGGTCAGGTGGAATGCCTTCCTTATCT 30769 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 || |||||| ||| ||| | || | | |||| || ||| || ||||| ||||||||| Sbjct 30768 TGGATTTTTGATTTTACATTGTCGATGGTGTCCGATGACTCCACCTCAAGCGTAATAGTT 30709 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || |||||||| || |||||||| | ||||| Sbjct 30708 TTACCCGTGAGGGTTTTCACGAAAATTTGCAT 30677 >seq1477 Length=21063 Score = 127 bits (140), Expect = 5e-24 Identities = 141/188 (75%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || || | ||||||||| || ||||| ||||||||||| || | |||||||| ||||| Sbjct 16763 AGCACTAAATGAAGAGTGGATTCTTTCTGGATGTTGTAGTCTGATAAAGTTCGGCCATCC 16704 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || ||| || || || || | | ||| ||||||| | |||||||| || ||| Sbjct 16703 TCAAGTTGTTTTCCTGCAAATATTAATCGCTGTTGGTCCGGAGGAATTCCTTCTTTATCT 16644 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 |||||||| |||||| | || | | |||| ||| ||| ||||| |||||||||||| Sbjct 16643 TGAATTTTGCTTTTGACGTTATCAATGGTGTCAGAAGACTCGACTTCGAGAGTAATAGTT 16584 Query 152073 TTGCCCGT 152080 || || || Sbjct 16583 TTACCGGT 16576 Score = 116 bits (128), Expect = 9e-21 Identities = 139/189 (74%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951 ||| || |||||||| ||||| |||||||| ||||||||||| | ||| |||| ||||| Sbjct 16479 GAGAACTAGATGAAGGGTAGATTCTTTTTGAATGTTGTAATCAGATAATGTTCGACCATC 16420 Query 151952 TTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTC 152011 || || ||| || || ||||| | || || || || | | ||||||||||| || Sbjct 16419 CTCAAGTTGTTTGCCAGCAAAGATTAATCTTTGTTGATCGGGTGGAATTCCTTCCTTGTC 16360 Query 152012 TTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGT 152071 || ||||| ||| ||| | || | | |||| || |||||| ||||| ||||| || Sbjct 16359 CTGTATTTTACTTTTCACATTATCAATGGTGTCGGATGACTCTACCTCAAGGGTAATGGT 16300 Query 152072 TTTGCCCGT 152080 ||| || || Sbjct 16299 TTTACCAGT 16291 Score = 104 bits (114), Expect = 5e-17 Identities = 147/205 (72%), Gaps = 4/205 (2%) Strand=Plus/Minus Query 151902 TGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAG--GC 151959 || ||||| || || ||||| |||||||||||| | ||| | |||||||| || || Sbjct 16982 TGGAGAGTCGATTCCTTTTGTATGTTGTAATCGTTAAGAGTACGTCCATCTTCAAGTTGC 16923 Query 151960 TTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTT 152019 ||| || || ||||| | || || ||||||| | || ||||| || ||||| || | Sbjct 16922 TTT--CCAGCAAAGATCAATCTTTGTTGGTCCGGTGGAATACCTTCTTTATCTTGGATCT 16865 Query 152020 TTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCG 152079 | |||||| | |||| | |||||| |||||||||||||| || ||||| || | Sbjct 16864 TACTTTTGACGTTGTCTATTGTATCTGAAGATTCTACTTCAAGAGTTATTGTTTTCCCAG 16805 Query 152080 TGAGAGTCTTCACGAAGACCTGCAT 152104 | | || || || || | |||||| Sbjct 16804 TCAATGTTTTGACAAATATCTGCAT 16780 Score = 89.7 bits (98), Expect = 1e-12 Identities = 135/190 (71%), Gaps = 4/190 (2%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 ||||| | |||||||| || |||||||| || ||||| |||| | |||| ||||| Sbjct 15924 AGGACTAAGTGAAGAGTGGATTCTTTTTGTATATTGTAGTCGGAAAGTGTTCGGCCATCC 15865 Query 151953 TCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTT 152010 || | ||||| || ||||| || | ||||| ||||| | | ||| ||||| || | Sbjct 15864 TCCAACTGCTTT--CCAGCGAAAATCAATCTCTGTTGGTCTGGTGGGATGCCTTCTTTGT 15807 Query 152011 CTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAG 152070 | |||||||| ||| ||| | || | | || || || |||||||| || |||| Sbjct 15806 CCTGAATTTTGCTTTTTACATTGTCGATAGTATCAGATGATTCGACTTCAAGGGTTATAG 15747 Query 152071 TTTTGCCCGT 152080 ||||||| || Sbjct 15746 TTTTGCCAGT 15737 >seq643 Length=60608 Score = 86.0 bits (94), Expect = 1e-11 Identities = 188/279 (67%), Gaps = 2/279 (1%) Strand=Plus/Plus Query 115629 TTCTATGCCATTTGGACATCTGATCTTTTTATGAAGCGAGTCAAGGCAAACGGAATGTGG 115688 ||||||||| |||||| | ||||||| ||||||||| |||| | ||| || ||| Sbjct 38369 TTCTATGCCCTTTGGATACCTGATCTCTTTATGAAGAGAGTTGAAAAAAATGGTGAATGG 38428 Query 115689 AGCCTCTTTTGTCCCAATGAAGCCCCTGGTCTTGATGATGTTTATGGTCCAGAGTTTGAG 115748 | ||| | || || |||| |||||||| | |||||| ||||| || |||||| Sbjct 38429 ACCCTGATGTGCCCTTGTGAATGTCCTGGTCTAGCTGATGTGTATGGCGATGAATTTGAG 38488 Query 115749 AATCTTTACGAAAGGTACGAGAAAGAGGGAAGAGCCAAAAGGGTTGTGAAGGCGCAAGAC 115808 | | || |||| ||| || |||| || | || | || | | | ||| ||| | Sbjct 38489 GCTTTATATGAAAAGTATGAACAAGAAGGGAAAGGCCGTAGAACTATTATGGCACAAAAG 38548 Query 115809 CTTTGGCA-TCATATCCTTGTCACACAGTCAGAGGTCGGAATGCCCTTTATTGCGTACAA 115867 || ||| | ||| || | | |||| |||| || | || ||||| ||||| Sbjct 38549 CTATGGTACTCA-ATAATCGAAGCACAAACAGAAACTGGTACCCCTTTTATGCTCTACAA 38607 Query 115868 AGATGCAGTTTGTCGAAAGAGCAATCAAAAGAATTTCGG 115906 ||||||| | | ||||||||||||||| ||| |||| Sbjct 38608 AGATGCATGTAATAAAAAGAGCAATCAAAAAAATCTCGG 38646 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153733060942385