Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Erysiphe_20necator_20[genbank_20GCA_5F000798735.1_202014-12-08] 6,224 sequences; 50,658,153 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq125 358 6e-94 seq3947 134 1e-26 >seq125 Length=45052 Score = 358 bits (396), Expect = 6e-94 Identities = 1207/1855 (65%), Gaps = 61/1855 (3%) Strand=Plus/Minus Query 36790 TCAACTGTGAATTTTATAGGATTTGATGCCGATTTTGTTCTCATATAATACATTCCAGTT 36849 ||||| ||||| | |||||| ||||| | | || | | || ||||| |||||| Sbjct 28788 TCAACGGTGAACTGAATAGGAGCAGATGCAGCCATAGTACGTAGGTAGTACATGCCAGTT 28729 Query 36850 TTTAGCCCCAATCTCCATCCGTAAAAATGCATACTGGTCAGTTTTGCGTAT-GTAGGAT- 36907 |||| || ||| ||||||| |||||||||||| || | |||||| || || || | Sbjct 28728 TTTAAGCCTAATTTCCATCCAGCAAAATGCATACTTGTTA-TTTTGCCCATAGTTGGGTC 28670 Query 36908 TATCTA-TATATATTGTCATTGATTGACTTTGATCTATAAACGCACCTCTGTCGGCTGCC 36966 | || | | ||||| |||||| || ||||| ||||| ||||| | || || ||| Sbjct 28669 TTTCAAGTGAATATT--CATTGACTGTGACTGATCAATAAATGCACCACGATCAGCAGCC 28612 Query 36967 ATTTCTAAAATACATTTT--TGAGATATCTCCCAAACCGTTTTATATATTTGTTTTATAT 37024 || || || || | || || ||||||||||| ||||| || | | ||| || | Sbjct 28611 AT--CTGAATTATGGTGCGCTGTGAGATCTCCCAAACTGTTTTGTAGAGTGCTTTAATTT 28554 Query 37025 TATCTGGTAAATCTAA---ATGTTGAATAGAACCATTATGTAACACAATTGTATTCTTTA 37081 |||| | || | | || |||||||| || || | | || ||| || | Sbjct 28553 CGGCTGGAATATTTGATATATTCTGAATAGAGCCTCCATCAGATATGATGCGATTTTTCA 28494 Query 37082 TGTCATTATTCCACAT----ATTTCTACTTATTAGTTCTCTCAATAGGTGTGGATTTACA 37137 ||| || | ||| | || ||||| || ||| | | || ||||||||| Sbjct 28493 TGTTATCAGACCATAAGCCCATATCTACC----AGATCTTTGAGTAACCAGGGATTTACA 28438 Query 37138 ACCTGAAAATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCAATG 37197 | ||||| ||||| | ||| || | | || |||||||| |||||||| |||| Sbjct 28437 ATTTGAAACTCTCCTGCTAAAACACGGCGTGAGTATATATTAGAGGTATATGGCTCAAAA 28378 Query 37198 GACTCATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGAAGG 37257 |||||||| | | |||||| |||| ||| || |||||||| |||| || | | Sbjct 28377 CACTCATTAAATCCAAGAATTTGACTTGTACTTGCGGTTGGCATTGGGGCTACGAGTAAG 28318 Query 37258 CTATTTCTCAATCCATGTGTATTAATTCTCTTTTTTAGTTCATTCCAATCCCATAAATCT 37317 ||||| | | |||| | ||||| |||| || |||||||||||| ||| Sbjct 28317 CTATTCCGAAGGCCATAAATCCTAATTTCAGCCTTTAAAGAATCCCAATCCCATAAGTCT 28258 Query 37318 GTTGGGTTCTTTAAC----CACATATCATATTGTAGAATACCTTTACTCGCTGGAGAATC 37373 || || | |||| |||||||| ||||| || ||| | || || || | Sbjct 28257 GTAGG----TGTAACGCCCCACATATCGTATTGAAGCTCACCCATCGAGGCGGGGGAGCC 28202 Query 37374 GTTATATGTCTCATAAGGTCCGTAAATTTTAGCTAGTTCGCAACT--AGATTCTAGTGCG 37431 | || ||||| || | || |||| |||| || |||| |||| ||| || Sbjct 28201 CTCGTAAGTCTCGTATGTACCTAGTTTTTTGGCTAAGTC--AACTGAAGATGTTAGAGCT 28144 Query 37432 GCATAATATATTGTTTCGAAAATTTGTATATTTAATATTTTTGCTTCTTCGCTATCGAAT 37491 |||| |||||| ||||| || || ||| | || | |||||| ||| |||||| Sbjct 28143 GCATGATATATGGTTTCAAAGATCTGTTTGTTGAGATGTTTTGCCTCTGGAGAGTCGAAT 28084 Query 37492 GCATAGCCCAATAATATAAACACATCAGCCAAACCCTGAACACCGATACCTATGGGTCTA 37551 | ||| ||| | ||||||||| || | || ||||| || | | |||| |||| Sbjct 28083 GGCAAGCGCAAAGCCAAAAACACATCTGCTAGCCCTTGAACTCCCACAGCTATTGGTCGG 28024 Query 37552 TGTTTCTTATTAGATCTAGACGA--TTCTATCACTGGATAATAATTGATATCTATTATTT 37609 || ||| | ||| |||| ||| ||| ||||| ||||| | ||| || |||| Sbjct 28023 TGGCGTAAATT-GCTCTT-ACGAGCTTCAGGCACAGGATAGTAATTAACATCAATGATTT 27966 Query 37610 TATTTAGATTTTTAACTAGTATTTTCGTAATTATTCTCAACTTGTCGAACATAAATACG- 37668 |||| ||||| |||||| | | | || | || || ||| || || | Sbjct 27965 TATTCAGATTCCTAACTACAACCTGACAGAC-ATCATGAAGTTTGTGAAAATCAAAAGTA 27907 Query 37669 TTAT------TATTAACAAATTTACTCAACGAAATAGATCCTAGATTACATACAGCAACT 37722 |||| |||||||| | | ||| | | ||| | | |||||| ||||| ||| Sbjct 27906 TTATCAGCTGTATTAACATAGGTCGGCAAAGCTAGGGATGCCAAATTACAAACAGCCACT 27847 Query 37723 TCATCTTCGTTACTAA--ATTGTATAATCTCTGTACAGAGATTACTCGATCTA---ATTG 37777 ||||| || | | ||| | ||| || ||||| |||||| || ||| || | Sbjct 27846 TCATC--CGGAGATGAGTATTCAACAATTTCGGTACAAAGATTA---GAGCTACGGATAG 27792 Query 37778 TTCCCAAATTGCTTTGATTGGATTTTTTATTACAAGAATCTTTATATAGTATATACGGCG 37837 | || | ||| |||||||| ||||||||||| | |||||| || || ||| | || | Sbjct 27791 TCCCGAGATTTTTTTGATTGCTCTTTTTATTACATGCATCTTTGTAGAGCATAAAAGGGG 27732 Query 37838 TTCCTTGTTCTATTTGAGCCTCGATAATAGATTTCCATAAACTTCTTGCTTTAACGATCG 37897 | || |||| |||| || ||||| || || | ||||| || ||| ||| | | Sbjct 27731 TACCAGTTTCTGTTTGTGCTTCGATTATTGAGTACCATAGCTTTTGTGCCATAA---TAG 27675 Query 37898 CTTTAAtttttttCT-TTGTT--TCGTATTCTATATATAATTTGTTAAAATCATTCCCCC 37954 | || |||| || || || || | | |||||| | ||| |||| || Sbjct 27674 TTCTACGGCCTTTCCCTTCTTGTTCATACTTTTCATATAAAGCCTCAAATTCATCGCCAT 27615 Query 37955 ATACATCGCATAATCCTGGACATTCGCATGGACACATTAGAGACCATTCTTCATCTTTTT 38014 | ||||| || || |||||||| || || ||||| |||| |||||| ||| ||||| Sbjct 27614 ACACATCAGCTAGACCAGGACATTCACAAGGGCACATCAGAGTCCATTCACCATTTTTTT 27555 Query 38015 CTACGCGTTCCATAAATAAATCAGGTACCCATAATGCAGTAAATAAATCTTTGGTTCTAT 38074 | || | | |||||| | |||||||| ||| | ||| |||| ||| | | | Sbjct 27554 CAACTCTCTTCATAAAGAGATCAGGTATCCAAAGGGCATAGAATAGATCACGTGCACGAA 27495 Query 38075 ATTCTTCGTTCCCTACATTCTTTCTTAAGCTTAGAAAATCGAATATATCAGCGTGCCATG 38134 |||||| || || ||| || | | | || || || |||||||| |||||||||| Sbjct 27494 CTTCTTCTTTGCCGTGATTTTTGCGGAGGTCGAGGAACTCAAATATATCGGCGTGCCATG 27435 Query 38135 GTTCTATATAAATCGACATTGCTCCTGGTCTTTTATCACCTCCCTGATTAATATATCTAA 38194 | || | ||| || | | |||||| || | |||| ||| || |||| || |||||| Sbjct 27434 GCTCCAAATATATAGCGAATGCTCCCGGACGCTTATTACCACCTTGATCAACATATCTGG 27375 Query 38195 CTGTGTTATTATATATTCTTAACATAGGTACTATACCATTAGATTTGCCGTTTATACCGG 38254 | || ||||| | | || | ||| ||||| |||||||| || || || ||| | || | Sbjct 27374 CAGTATTATTGAAGACTCGGAGCATCGGTACAATACCATTTGAGTTTCCATTTGTTCCTG 27315 Query 38255 ATATATAAGTACCCTTAGCTCGTATATTACTTATCGACAATCCTATTCCACCTGCATGTT 38314 ||||||| ||| | || || || | || || || || ||||| |||| || Sbjct 27314 CGATATAAGCACCTGTCGCGCGAATCCGATGAATATTTAAGCCAATACCACCGGCATTTT 27255 Query 38315 TTGATATTAAAGCGCATTGTTTTAACGTATCAAATATACCTTCTATACTGTCATCCTTTA 38374 | || || | |||||| ||| || ||||| | || || || ||||| || || || | Sbjct 27254 TAGAAATCATAGCGCAAGTTTTCAAAGTATCGTAGATTCCATCAATACTATCCTCTTTCA 27195 Query 38375 TTGGTAGTATAAAACAACTAGACATTTGAGGCAATGGAGTTCCGGCGTTAAATAATGTAG 38434 | | || ||| || ||| | ||||| |||||| ||||| ||||| |||| Sbjct 27194 TATCAATTAAAAAGCATGAAGAGAGTTGAGATTGTGGAGTACCGGCTGCAAATAGAGTAG 27135 Query 38435 GAGATGCATGTATGAACCATTTTTCCGACAAATAATTATATGTTTCTATTACATCATCTA 38494 | || ||||| | || |||| | |||| |||||| || ||||| || || | Sbjct 27134 GGGAAGCATGCGTAAAGTATTTATTGGACATTAGATTATAAGTCTCTATAGCAGATTCAA 27075 Query 38495 TATCACCGCCGTGAATACCTAGAGATACCCTCATTAGCATATGTTGTGGTCTTTCTATTA 38554 | ||| | |||||| || | || || | ||||| |||||||||||| | || | | Sbjct 27074 TGTCATCTTGGTGAATTCCAACAGCGACACGCATTATCATATGTTGTGGCCGCTCCACAA 27015 Query 38555 TTTTATTATTCTGTTTAAGTAGATACGATTTTTCTAATGTTTTTATTCCAAAATA 38609 |||||| ||| | ||| ||||| ||| |||| | || || | |||||||| Sbjct 27014 TTTTATCATTGAGGCGAAGAAGATATGATCTTTCCAGAGTCTTGAAGCCAAAATA 26960 >seq3947 Length=15482 Score = 134 bits (148), Expect = 1e-26 Identities = 302/454 (67%), Gaps = 0/454 (0%) Strand=Plus/Minus Query 11338 CTTTTGATATTCACTAACTCGTCGTTCGAAAAAATTAGTCTTACCTTCTAGTGATATATA 11397 ||||||||| |||| |||||| ||||||||| |||||||| || | | || |||| Sbjct 9248 CTTTTGATAGTCACCTACTCGTTTTTCGAAAAAGTTAGTCTTCCCAGCCAAAGAGATATT 9189 Query 11398 CTCCATAAAGCTAAAAGGATTATATACATTGAAGACTTTTTCACAACCTAACTCTGTTAA 11457 ||||| || ||| ||||| | || ||| | ||||| | |||||| | Sbjct 9188 TTCCATGAAATCAAATGGATTTTTGACTTTGTATACTTTGGAATTTCCTAACGAGAGGAG 9129 Query 11458 TAATCTATCTGCGACGAATTCTATATACTGAGACATTAAACAACAATTCATACCTATAAG 11517 | || |||||| |||||||| || ||||| ||| | | ||||| || | || Sbjct 9128 AAGTCGATCTGCAACGAATTCGATGTACTGCTTCATCAGAGTGGCGTTCATGCCGAGTAG 9069 Query 11518 ATCCACCGGAATAGCAACTGTCAAAAACTCCTTTTCTATATTAACCGCATCAATGATTAT 11577 | | || | || | || | ||| || | |||||| | || || | |||| | Sbjct 9068 AGCGCATGGCAGCGCTTCAGTTAGAAATTCTTGTTCTATCTCGACGGCTTGTGTGATAAC 9009 Query 11578 CGACGTTATAACTTCCTTAGATGGTGGATGTAATAAATGTTTAAACATTAAACACGCAAA 11637 | | | | |||||||||| || |||||| ||| | | ||| ||||| Sbjct 9008 ATCCTGAACAGACTGCTTAGATGGTCTGTGCTTCAAATGTGAAAAGAGGAGACAAGCAAA 8949 Query 11638 ATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCAT 11697 || |||| |||||||| | || ||||| |||||||| |||| || | ||| Sbjct 8948 GTCCGTGTGTAGGCCTTCGTCACGTGAAATAAGTTCGTTAGAAAAGGTTAGGCCAGCCAT 8889 Query 11698 CAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTC 11757 ||| |||||||| || | |||||| || | |||||| |||||| || ||||||||||| Sbjct 8888 CAACCCTCGTTTCTTCAACCAAAAAATGGAAGCAAAGGAACCACTGAAAAATATTCCCTC 8829 Query 11758 CACAGCTGCAAATGCTACTACTCTTTCTCCATAT 11791 ||| || ||||| ||||| | | || |||| || Sbjct 8828 CACTGCAGCAAAAGCTACAAGACGTTGTCCAAAT 8795 Score = 105 bits (116), Expect = 6e-18 Identities = 224/334 (67%), Gaps = 3/334 (1%) Strand=Plus/Minus Query 11850 TTGTTTCTATAGCGTTAAATAAATGCATTTTTTCTATATTATCTCTTACATATGTATCTA 11909 |||| || ||||| || || | || |||||| | |||| ||| || ||||| | Sbjct 8685 TTGTCTCGATAGCATTGAAAAGATAAGTTTTTTGAGCTTGATCTTTTATGTAAGTATCGA 8626 Query 11910 TTAATAAACTATACATTTCTGAATGAATATTTTCCATAGCTATTTGAAATCCATAGAAAC 11969 |||| | ||| |||| || || ||||||||||| |||||||||||||| || Sbjct 8625 TTAAAAGCGAATAAGTTTCAGAGTGGATATTTTCCATCATAATTTGAAATCCATAAAAGA 8566 Query 11970 ATCGTGCCTCTGAACACTGTACATCCACATAAAATCTTTCCGCTAAATTCTCATTTACAA 12029 ||| ||||| | | ||| || || ||| | || | | || ||||| |||| Sbjct 8565 ATCTAGCCTCAGGAATCTGCACTTCACTGCTAAACCGCTCGACGAGGTTTTCATTAACAA 8506 Query 12030 TACCATCACTAGATGCAAAAAATGCTAGTATATGTTTTATAAAGTATTTTTCGTCTTTAG 12089 | || || | |||||||| ||||| | ||| |||||||||| ||| || | | Sbjct 8505 TCCCGTCTGAGGCGGCAAAAAAGGCTAGCACATGAGATATAAAGTATCGTTCATCATCAT 8446 Query 12090 TTA---ATTTATCCCAATCATCTAAATCTTTTGATAAATCTACTTCTTCAACGGTCCAAA 12146 | | |||| |||||| | | |||||| || ||||| | || ||| | ||||||| Sbjct 8445 TGAGACGGTTATTCCAATCGTGAATATCTTTAGACAAATCAATCTCCTCAGCAGTCCAAA 8386 Query 12147 AACTTGCCACTGATTGTTTATACATTTTCCAGAT 12180 || |||| | | || ||| ||||| | ||| || Sbjct 8385 AAGATGCCTCGGCTTTTTTGTACATATGCCATAT 8352 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468488348770560