Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Erysiphe_20necator_20[genbank_20GCA_5F000798735.1_202014-12-08] 6,224 sequences; 50,658,153 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq3947 161 9e-35 >seq3947 Length=15482 Score = 161 bits (178), Expect = 9e-35 Identities = 581/901 (64%), Gaps = 61/901 (7%) Strand=Plus/Minus Query 13369 TTTTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATATTT 13428 |||||||| |||| |||| |||||| ||||||||||| || || ||| || |||||| Sbjct 9247 TTTTGATAGTCACCTACTCGTTTTTCGAAAAAGTTAGTCTTCCCAGCCAAAGAGATATTT 9188 Query 13429 TCCATAAAATCGAATGGATTTGTTGACATAA-ACACTTTATCACAACCTAGTTCTAATAA 13487 ||||| ||||| ||||||||| ||||| | | ||||| | |||| | | Sbjct 9187 TCCATGAAATCAAATGGATTT-TTGACTTTGTATACTTTGGAATTTCCTAACGAGAGGAG 9129 Query 13488 TAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAG 13547 | || ||| |||| || || || || || ||| | | ||||| || | ||| Sbjct 9128 AAGTCGATCTGCAACGAATTCGATGTACTGCTTCATCAGAGTGGCGTTCATGCCGAGTAG 9069 Query 13548 TTTTACAGGAATTATATTAGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAAT 13607 || | | ||||| |||||||| |||||| || || | | |||| Sbjct 9068 AGCGCATGGCAGCGCTTCAGTTAGAAATTCTTGTTCTATCTCGACGGCTTGTGTGATAAC 9009 Query 13608 AATCTTAATAATGTCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACACGCAAA 13667 | || || | | ||||| || | || | |||| ||| | | ||| ||||| Sbjct 9008 ATCCTGAACAGACTGCTTAGATGGTCTGTGCTTCAAATGTGAAAAGAGGAGACAAGCAAA 8949 Query 13668 ATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCAT 13727 || || ||||| || || | |||||||||||| ||||| |||| || | ||| Sbjct 8948 GTCCGTGTGTAGGCCTTCGTCACGTGAAATAAGTTCGTTAGAAAAGGTTAGGCCAGCCAT 8889 Query 13728 CAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTC 13787 ||| |||||||| || |||||||| || | ||| || || || || ||||||||||| Sbjct 8888 CAACCCTCGTTTCTTCAACCAAAAAATGGAAGCAAAGGAACCACTGAAAAATATTCCCTC 8829 Query 13788 AACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGT-TTGATATCCATT 13846 ||||||||||| |||| || |||| |||||| | | | ||||| |||| ||||| Sbjct 8828 CACTGCAGCAAAAGCTACAAGACGTTGTCCAAATGTCGACTCTTTGTCTTGA-ATCCAAC 8770 Query 13847 TTCTAGCCCATTCAGAtttttttttAATAAA-------ATCCATTGTT-TCGATT---GC 13895 ||||| ||||| ||||| |||||| | || || ||| ||||| || Sbjct 8769 GGACGGCCCAGTCAGACTTTTTCTTAATACAAGGTACTATGAATCGTTAACGATTATCGC 8710 Query 13896 -ATTGAAT---AAATG----TTCCTTCTC------------------------TTTAGTA 13923 || | | ||||| || ||| || ||| | Sbjct 8709 GATAGTGTGGGAAATGGGAATTACTTGTCTCGATAGCATTGAAAAGATAAGTTTTTTGAG 8650 Query 13924 CTTGA-----AATGTATGTATCAATAAGTAAGC-TATACATTTCAGAGTGTATGTTTTCT 13977 ||||| ||||| ||||| || | |||| ||| |||||||||| || ||||| Sbjct 8649 CTTGATCTTTTATGTAAGTATCGATTA-AAAGCGAATAAGTTTCAGAGTGGATATTTTCC 8591 Query 13978 ATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGTACCTCCGAGTAAAAT 14037 || || ||||| |||||||| ||||||| || | || || || | ||| Sbjct 8590 ATCATAATTTGAAATCCATAAAAGAATCTAGCCTCAGGAATCTGCACTTCACTGCTAAAC 8531 Query 14038 CTTTCTGCCAAGTTTTCATTAACAATACCATCACTAGCTGCAAAAAATGCCA--ATATGT 14095 | || | | ||||||||||||||| || || || |||||||| || | | ||| Sbjct 8530 CGCTCGACGAGGTTTTCATTAACAATCCCGTCTGAGGCGGCAAAAAAGGCTAGCACATGA 8471 Query 14096 TTTTAATAAAGTATTGCTCTTCATTGTTGA---GTTTTTTCCAATCGGCTAAATCCTTAG 14152 | ||||||||| | || |||| |||| | || ||||||||| | ||| |||| Sbjct 8470 GAT--ATAAAGTATCGTTCATCATCATTGAGACGGTTATTCCAATCGTGAATATCTTTAG 8413 Query 14153 AAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCTTTTTTATACATTACCCATA 14212 | | ||| | || ||| | ||||||||| || | |||||||| ||||| ||||| Sbjct 8412 ACAAATCAATCTCCTCAGCAGTCCAAAAAGATGCCTCGGCTTTTTTGTACATATGCCATA 8353 Query 14213 T 14213 | Sbjct 8352 T 8352 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478551565791360