Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Erysiphe_20necator_20[genbank_20GCA_5F000798735.1_202014-12-08] 6,224 sequences; 50,658,153 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq1089 159 8e-34 seq359 150 4e-31 seq2354 129 1e-24 seq3947 109 1e-18 >seq1089 Length=20904 Score = 159 bits (176), Expect = 8e-34 Identities = 166/215 (77%), Gaps = 2/215 (1%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || |||||||| | ||| |||| ||| | || ||||||||||| || || ||||| Sbjct 4289 ATGCCTCCTCTTAGACGAAGCACTAAATGAAGAGTGGATTCTTTCTGGATGTTGTAGTCT 4348 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 |||| ||||| || || || ||||||||||| ||||| |||| | |||||| || ||| Sbjct 4349 GATAAAGTTCGGCCATCCTCAAGTTGTTTTCCTGCAAATATTAATCGCTGTTGGTCCGGA 4408 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTT-ACATTTTCTACGGTATCGCTAGGTTC 104508 || |||||||||||||| ||||| ||||||||| || || || | ||| || || || Sbjct 4409 GGAATTCCTTCTTTATCTTGAAT-TTTGCTTTTGACGTTATCAATGGTGTCAGAAGACTC 4467 Query 104509 TACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTT 104543 || || || |||||||| ||||| |||| | ||| Sbjct 4468 GACTTCGAGAGTAATAGTTTTACCGGTAACTATTT 4502 Score = 152 bits (168), Expect = 1e-31 Identities = 150/191 (79%), Gaps = 2/191 (1%) Strand=Plus/Plus Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407 || |||||||| | ||||||||||| ||||| || || ||||||| |||| ||| || Sbjct 4592 AGAACTAGATGAAGGGTAGATTCTTTTTGAATGTTGTAATCAGATAATGTTCGACCATCC 4651 Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467 || |||||||| |||||||| |||| || |||||||| || || |||||||| || ||| Sbjct 4652 TCAAGTTGTTTGCCAGCAAAGATTAATCTTTGTTGATCGGGTGGAATTCCTTCCTTGTCC 4711 Query 104468 TGAATCTTTGCTTTT-ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526 || || ||| ||||| ||||| || | ||| ||| | |||||||| || ||||| || Sbjct 4712 TGTAT-TTTACTTTTCACATTATCAATGGTGTCGGATGACTCTACCTCAAGGGTAATGGT 4770 Query 104527 CTTACCAGTAA 104537 |||||||||| Sbjct 4771 TTTACCAGTAA 4781 Score = 147 bits (162), Expect = 5e-30 Identities = 137/174 (79%), Gaps = 0/174 (0%) Strand=Plus/Plus Query 104362 TGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCC 104421 ||| |||||||| || || ||||||||||| || |||| |||||| || ||||||||||| Sbjct 4882 TGTCGATTCTTTTTGGATGTTATAGTCAGAAAGTGTTCGACCGTCCTCAAGTTGTTTTCC 4941 Query 104422 AGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTT 104481 |||||||||||| || |||||||| || || ||||||||||| || || || || ||| Sbjct 4942 AGCAAAAATTAGTCTTTGTTGATCGGGTGGAATTCCTTCTTTGTCTTGTATTTTACTTTT 5001 Query 104482 TACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGT 104535 |||||| || | ||| || | || |||||||| || || || || ||||| Sbjct 5002 TACATTGTCGATGGTGTCAGACGACTCGACCTCTAGAGTGATGGTTTTTCCAGT 5055 Score = 127 bits (140), Expect = 5e-24 Identities = 156/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 ||| |||| || | || ||||| || || || || || || ||||| | || || Sbjct 4078 AAGCACTAAGTGGAGAGTCGATTCCTTTTGTATGTTGTAATCGTTAAGAGTACGTCCATC 4137 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 ||| ||||| ||||||||||| || | || ||||| || || || || ||||||||||| Sbjct 4138 TTCAAGTTGCTTTCCAGCAAAGATCAATCTTTGTTGGTCCGGTGGAATACCTTCTTTATC 4197 Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526 || ||||| ||| || || |||| ||||| || |||||| || || || || || Sbjct 4198 TTGGATCTTACTTTTGACGTTGTCTATTGTATCTGAAGATTCTACTTCAAGAGTTATTGT 4257 Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || ||||| | |||||| |||||||||||||| Sbjct 4258 TTTCCCAGTCAATGTTTTGACAAATATCTGCAT 4290 >seq359 Length=25150 Score = 150 bits (166), Expect = 4e-31 Identities = 175/236 (74%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 104324 TTATTTATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTA 104383 || ||| ||| || | || | |||||| ||||| | ||||||||||| || || || Sbjct 13565 TTCTTTGCTCCTCCACGAAGACGAAGTACGAGATGAAGAGTAGATTCTTTTTGGATGTTG 13624 Query 104384 TAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGA 104443 |||||||| | || | ||||| || ||||||||||| |||||||| | | ||||| Sbjct 13625 TAGTCAGACAATGTCCGGCCGTCCTCGAGTTGTTTTCCCGCAAAAATCAAACGTTGTTGG 13684 Query 104444 TCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTA 104503 ||||| || || ||||| ||||| || || |||| ||||||||| || | ||| || Sbjct 13685 TCAGGTGGAATGCCTTCCTTATCTTGGATTTTTGATTTTACATTGTCGATGGTGTCCGAT 13744 Query 104504 GGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 | || ||||| || |||||||| ||||| || || ||||| || || || ||||| Sbjct 13745 GACTCCACCTCAAGCGTAATAGTTTTACCCGTGAGGGTTTTCACGAAAATTTGCAT 13800 >seq2354 Length=38096 Score = 129 bits (142), Expect = 1e-24 Identities = 136/179 (76%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 104372 TTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATT 104431 || |||||||| || ||||| ||||||| || ||||| || ||||| |||||||| || Sbjct 4352 TTTTGAATATTGTAATCAGAAAGAGTTCGTCCATCTTCAAGCTGTTTACCAGCAAATATC 4293 Query 104432 AGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCT 104491 | | ||||||||||| || ||||| ||||||||||| ||||||||||| ||||| || Sbjct 4292 AAACGTTGTTGATCAGGGGGGATTCCCTCTTTATCCTGGATCTTTGCTTTCACATTATCA 4233 Query 104492 ACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAA 104550 | || || | || ||||||| || ||||| || ||||| || || || || || Sbjct 4232 ATTGTGTCAGAGGACTCAACCTCTAAGGTGATAGTTTTGCCAGTTAGGGTCTTGACGAA 4174 >seq3947 Length=15482 Score = 109 bits (120), Expect = 1e-18 Identities = 201/294 (68%), Gaps = 3/294 (1%) Strand=Plus/Plus Query 268733 ATATGGAGGATGTACAAACAGGCCGTTGCTTCTTTTTGGACTGTAGAAGAAGTAGATCTG 268792 |||||| ||||||||| | |||| || ||||||||||||| || || | ||| || Sbjct 8352 ATATGGCATATGTACAAAAAAGCCGAGGCATCTTTTTGGACTGCTGAGGAGATTGATTTG 8411 Query 268793 TCTTATGACTTAATAGATTGGAAAAA---TTTAAAACCAGAAGAAAGAAGATTTATATCT 268849 ||| | || | |||||||| || | | || || ||| || ||||||||| Sbjct 8412 TCTAAAGATATTCACGATTGGAATAACCGTCTCAATGATGATGAACGATACTTTATATCT 8471 Query 268850 TATATTCTTGCGTTTTTTGCAGTTAGTGATGGTATCGTTAACGAAAATCTAGTAGAGAAG 268909 || | || || |||||||| | || || || ||||| ||||| || || ||| | Sbjct 8472 CATGTGCTAGCCTTTTTTGCCGCCTCAGACGGGATTGTTAATGAAAACCTCGTCGAGCGG 8531 Query 268910 TTCTGTCAAGAGGTACAGATTCCTGAAGCCAGATGTTTTTACGGATTCCAGATAGCTATA 268969 || | || || ||||||||||| || |||| ||||| ||||| || || || Sbjct 8532 TTTAGCAGTGAAGTGCAGATTCCTGAGGCTAGATTCTTTTATGGATTTCAAATTATGATG 8591 Query 268970 GAAAATATTCATTCAGAGATGTACAGTCTATTAATAGATACTTATATAGATGAT 269023 |||||||| || || || | || || ||||| |||||||| ||| | ||| Sbjct 8592 GAAAATATCCACTCTGAAACTTATTCGCTTTTAATCGATACTTACATAAAAGAT 8645 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151306581734592