Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Erysiphe_20necator_20[genbank_20GCA_5F000798735.1_202014-12-08] 6,224 sequences; 50,658,153 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq125 508 7e-139 seq3947 208 9e-49 >seq125 Length=45052 Score = 508 bits (562), Expect = 7e-139 Identities = 1360/2062 (66%), Gaps = 43/2062 (2%) Strand=Plus/Minus Query 61995 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 62054 ||||| ||||| ||||| ||||| | | |||||||| |||||||| || ||||||| Sbjct 28782 GTGAACTGAATAGGAGCAGATGCAGCCATAGTACGTAGGTAGTACATGCCAGTTTTTAAG 28723 Query 62055 CCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATA 62114 || | ||||||| |||||||||||| |||| |||| | | || ||| | Sbjct 28722 CCTAATTTCCATCCAGCAAAATGCATACTTGTTATTTTGCCCATAGTTGGGTCTTTCAAG 28663 Query 62115 TGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATG 62174 || |||||||| || || ||||| || || || || | || |||||||| | || Sbjct 28662 TGAATATTCATTGACTGTGACTGATCAATAAATGCACCACGATCAGCAGCCATCTGAATT 28603 Query 62175 ATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGG 62234 || || |||| || ||||||| ||||| || | | ||||| || |||||| Sbjct 28602 ATGGTGCGCTGTGAGATCTCCCAAACTGTTTTGTAGAGTGCTTTAATTTCGGCTGGAATA 28543 Query 62235 TTTG---TATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCATCATTC 62291 |||| |||||||||| || || ||||| | || || | ||| || || | |||| | Sbjct 28542 TTTGATATATTCTGAATAGAGCCTCCATCAGATATGATGCGATTTTTCATGTTATCAGAC 28483 Query 62292 CATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCA 62351 ||||| | || | | || | || | ||||| || | |||||| ||||| Sbjct 28482 CATAAGCCCATATCTACCAGATCTTTGAGTAACCAGGGATTTACAATTTGAAACTCTCCT 28423 Query 62352 GACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACCGACTCATTATTTCCC 62411 | || || | || | ||| |||||| |||||| || || | |||||||| ||| Sbjct 28422 GCTAAAACACGGCGTGAGTATATATTAGAGGTATATGGCTCAAAACACTCATTAAATCCA 28363 Query 62412 AAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCG 62471 | ||||||| || ||| || ||||| || || || | ||| ||||| | ||| || Sbjct 28362 AGAATTTGACTTGTACTTGCGGTTGGCATTGGGGCTACGAGTAAGCTATTCCGAAGGCCA 28303 Query 62472 TATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCGACGGTACAACNNNN 62531 || | || |||| | | |||| || ||||||| ||| | || | ||| ||| Sbjct 28302 TAAATCCTAATTTCAGCCTTTAAAGAATCCCAATCCCATAAGTCTGTAGGTGTAACGCCC 28243 Query 62532 NNNNNNNNNNNTTGTAGAATACCGTTACTGGCGTACGATCCTACATATGTATCGTATGGT 62591 ||| || ||| | |||| || || | || || ||||||| Sbjct 28242 CACATATCGTATTGAAGCTCACCCATCGAGGCGGGGGAGCCCTCGTAAGTCTCGTATGTA 28183 Query 62592 CCTTCCTTCTCAGCTAGTTCACAACTC--GCCTCTAATGCACCGTAATAAATGGTTTCGA 62649 ||| || | |||| ||| ||| | || || | | ||| |||||||| | Sbjct 28182 CCTAGTTTTTTGGCTAAGTCA--ACTGAAGATGTTAGAGCTGCATGATATATGGTTTCAA 28125 Query 62650 AGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGATAATTTAAGAGAATAA 62709 |||||| || || |||| || ||| || | || ||||| | || | || Sbjct 28124 AGATCTGTTTGTTGAGATGTTTTGCCTCTGGAGAGTCGAATGGCAAGCGCAAAGCCAAAA 28065 Query 62710 ACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTT 62769 || | || |||| |||||||| || | | | || |||| || | ||| | || Sbjct 28064 ACACATCTGCTAGCCCTTGAACTCCCACAGCTATTGGTCGGTGGCGTAAATT-GCTCTTA 28006 Query 62770 C-AGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACAATT 62828 | |||||| || | |||||| ||||||| ||| || |||||||| ||||| || || | Sbjct 28005 CGAGCTTCAGGCACAGGATAGTAATTAACATCAATGATTTTATTCAGATTCCTAACTACA 27946 Query 62829 ACTTTGACC-ACATCCTTCAGTTTGAGAAAATCAAATCGCCCATC-----TATTA-CAAA 62881 || | ||| ||||| | |||||| |||||||||| ||| ||||| || | Sbjct 27945 ACCT-GACAGACATCATGAAGTTTGTGAAAATCAAAAGTATTATCAGCTGTATTAACATA 27887 Query 62882 CATGTTCAAGGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTG 62941 | ||| || | ||||||| ||||||||| || || |||| | | | |||| Sbjct 27886 GGTCGGCAAAGCTAGGGATGCCAAATTACAAACAGCCACTTCATCCGGAGATGAGTATTC 27827 Query 62942 TATTATCTCAGTGCAAAGATTA---CTACACTTGATAGTTCCTAAATTTTGTTGATTACT 62998 | || || || ||||||||| |||| |||||| || | ||||| |||||| || Sbjct 27826 AACAATTTCGGTACAAAGATTAGAGCTACG---GATAGTCCCGAGATTTTTTTGATTGCT 27770 Query 62999 CTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTC 63058 |||||| ||||| ||||| || || || || || || ||||||||||| | || | ||| Sbjct 27769 CTTTTTATTACATGCATCTTTGTAGAGCATAAAAGGGGTACCAGTTTCTGTTTGTGCTTC 27710 Query 63059 TATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATTTGTATCTCCTTTCTCTT-T 63117 || || | | ||| | | | ||| || |||| || || |||||| ||| | Sbjct 27709 GATTATTGAGTACCATAGCTTTTGTGCC---ATAATAG--TTCTACGGCCTTTCCCTTCT 27655 Query 63118 CGT--ATAGTGT--ATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGA 63173 || ||| | | ||| || || || || || || | |||| | | |||||| Sbjct 27654 TGTTCATACTTTTCATATAAAGCCTCAAATTCATCGCCATACACATCAGCTAGACCAGGA 27595 Query 63174 CATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGA 63233 |||||| || ||||||| | ||| || || | | | |||| |||||||||||| Sbjct 27594 CATTCACAAGGGCACATCAGAGTCCATTCACCATTTTTTTCAACTCTCTTCATAAAGAGA 27535 Query 63234 TCAGGAATCCAAAGAGCTATA-AATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATT 63292 ||||| |||||||| || ||| |||||||| | | | | ||| || || || ||| Sbjct 27534 TCAGGTATCCAAAGGGC-ATAGAATAGATCACGTGCACGAACTTCTTCTTTGCCGTGATT 27476 Query 63293 CTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCAT 63352 || || ||||||||| | | ||||| | ||||| || ||||| ||||| || | Sbjct 27475 TTTGCGGAGGTCGAGGAACTCAAATATATCGGCGTGCCATGGCTCCAAATATATAGCGAA 27416 Query 63353 AACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCT 63412 |||| || || || || || || ||||| | ||||| || || ||||| | |||| Sbjct 27415 TGCTCCCGGACGCTTATTACCACCTTGATCAACATATCTGGCAGTATTATTGAAGACTCG 27356 Query 63413 CAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCTTCCACTGGC 63472 | ||| || | |||||| ||||| | ||||| || || | |||||| || | || Sbjct 27355 GAGCATCGGTACAATACCATTTGAGTTTCCATTTGTTCCTGCGATATAAGCACCTGTCGC 27296 Query 63473 ACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCG 63532 ||||| | ||| || || || || || || ||||||| || | ||||| Sbjct 27295 GCGAATCCGATGAATATTTAAGCCAATACCACCGGCATTTTTAGAAATCATAGCGCAAGT 27236 Query 63533 TTTTAACGTGTCATAGATACCCTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCT 63592 ||| || || || ||||| || || || ||||| || |||| | || || ||| || Sbjct 27235 TTTCAAAGTATCGTAGATTCCATCAATACTATCCTCTTTCATATCAATTAAAAAGCATGA 27176 Query 63593 AGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCA 63652 ||| | ||| | ||| || || ||||| ||||| ||||| |||||||| | Sbjct 27175 AGAGAGTTGAGATTGTGGAGTACCGGCTGCAAATAGAGTAGGGGAAGCATGCGTAAAGTA 27116 Query 63653 TTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCC 63712 ||| | || | |||||| || ||||| ||||| || || || || ||| |||||||| Sbjct 27115 TTTATTGGACATTAGATTATAAGTCTCTATAGCAGATTCAATGTCATCTTGGTGAATTCC 27056 Query 63713 TACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAA 63772 || ||||||||||||| ||| || || || | || || || || | || | || Sbjct 27055 AACAGCGACACGCATTATCATATGTTGTGGCCGCTCCACAATTTTATCATTGA-GGCGAA 26997 Query 63773 CAAG-TAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGT 63831 ||| || ||| |||||| ||| || || |||||||| | ||| ||||||||| || | Sbjct 26996 GAAGATATGATCTTTCCAGAGTCTTGAAGCCAAAATACTGGTAATTAAAGTCTCGATCAT 26937 Query 63832 AAATAATAACCGAGTTGAGTTTATCCTTATATTTGTTAACTATATC---CATGGTGATAC 63888 ||| || | || || || | | | | || || |||| | || ||| | | | Sbjct 26936 AAACTATCGCGGAATTAAGCTCAGCTTCATGCTTCATAACAGTTTCGTACATAGATTTGC 26877 Query 63889 TTGAAATAATCGGAGAATGTTTCCCATTTTTAGGATTAACATAGTTGAATAAATCCTCCA 63948 | || || ||||| |||||||||||| ||||| ||||| | | | | ||| | Sbjct 26876 T---GATCATTGGAGATATTTTCCCATTTTTTGGATTTACATAATGGTAGAGATCAGAGA 26820 Query 63949 TCACTTCACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGG 64008 |||| | ||| ||||||||||| ||||||||||| || || ||||| | || | Sbjct 26819 CTACTTGAGAAAAGGCTTTTTTTGTTTGTTTGTGTAGATTAGAAACAGCTATGCGTGCTG 26760 Query 64009 CTAGAATGGCATAATCCGGATG 64030 | ||||| || || || ||||| Sbjct 26759 CAAGAATAGCGTAGTCGGGATG 26738 >seq3947 Length=15482 Score = 208 bits (230), Expect = 9e-49 Identities = 588/910 (65%), Gaps = 56/910 (6%) Strand=Plus/Minus Query 33000 CATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTC 33059 ||| ||||| ||||| || ||||| || |||||||||||||| ||||| || || | Sbjct 9260 CATCACTCCGGCCTTTTGATAGTCACCTACTCGTTTTTCGAAAAAGTTAGTCTTCCCAGC 9201 Query 33060 CAATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCC 33119 ||| || |||||||||||||||||||| ||||| | || || || | ||| | ||| Sbjct 9200 CAAAGAGATATTTTCCATGAAATCAAATGGATTTTTGACTTTGTATACTTTGGAATTTCC 9141 Query 33120 CAATTCAGAAATCAA-TCTATCCGCGACGAATTCTATATATGTTTTCATCATTTCACAAT 33178 || ||| || || ||| || |||||||| || || ||||||| | Sbjct 9140 TAACG-AGAGGAGAAGTCGATCTGCAACGAATTCGATGTACTGCTTCATCAGAGTGGCGT 9082 Query 33179 TCATTCCTATAAGTTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCG 33238 |||| || | || ||| || || |||| |||||||||||||| || || | Sbjct 9081 TCATGCCGAGTAGAGCGCATGGCAGCGCTTCAGTTAGAAATTCTTGTTCTATCTCGACGG 9022 Query 33239 CATCTGTTATAATAGATCTAACGGTTTCTTCACTCGGTGGATGCAATAAATGTTTAAACA 33298 | | ||| |||| | ||| | | | | ||| ||| |||||| ||| | Sbjct 9021 CTTGTGTGATAACATCCTGAACAGACTGCTTAGATGGTCTGTGCTTCAAATGTGAAAAGA 8962 Query 33299 TCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACG 33358 | ||| || || || ||| || || ||||| | ||| |||||||| ||||| | Sbjct 8961 GGAGACAAGCAAAGTCCGTGTGTAGGCCTTCGTCACGTGAAATAAGTTCGTTAGAAAAGG 8902 Query 33359 TGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAA 33418 | || || | ||| | || || || || | |||||| |||||||| || || ||| | Sbjct 8901 TTAGGCCAGCCATCAACCCTCGTTTCTTCAACCAAAAAATGGAAGCAAAGGAACCACTGA 8842 Query 33419 AGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAAC-CGGCGCT--GT 33475 | || ||||| || ||||||||||| || | ||| | | |||| | || | || || Sbjct 8841 AAAATATTCCCTCCACTGCAGCAAAAGCTACAAGACGTTGTCCAAATGTCGACTCTTTGT 8782 Query 33476 CATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCA-------TCGTT 33528 | || ||||| ||||| || | ||| || || | |||||| | ||||| Sbjct 8781 CTTGAATCCAACGGACGGCCCAGTCAGACTTTTTCTTAATACAAGGTACTATGAATCGTT 8722 Query 33529 -----------------------------------------TCTATGGCATTAAAGAGAT 33547 || || ||||| || |||| Sbjct 8721 AACGATTATCGCGATAGTGTGGGAAATGGGAATTACTTGTCTCGATAGCATTGAAAAGAT 8662 Query 33548 AGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAAT 33607 | |||||| | |||||| | ||||||||||| ||||| ||| |||| || | Sbjct 8661 AAGTTTTTTGAGCTTGATCTTTTATGTAAGTATCGATTAAAAGCGAATAAGTTTCAGAGT 8602 Query 33608 GAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTT 33667 | || ||||| || || |||||||| || || |||||||||| | |||||| |||| Sbjct 8601 GGATATTTTCCATCATAATTTGAAATCCATAAAAGAATCTAGCCTCAGGAATCTGCACTT 8542 Query 33668 CTGTACAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACG 33727 | | | ||| || || | | |||||||| || || ||||| ||| |||||||| | Sbjct 8541 CACTGCTAAACCGCTCGACGAGGTTTTCATTAACAATCCCGTCTGAGGCGGCAAAAAAGG 8482 Query 33728 CCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTA---GTTTATTCCAATCATTGA 33784 | | ||||| |||||| ||| ||| || | | | ||||||||||| | | Sbjct 8481 CTAGCACATGAGATATAAAGTATCGTTCATCATCATTGAGACGGTTATTCCAATCGTGAA 8422 Query 33785 TATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACA 33844 |||||||||| | ||| | || || | |||||||| |||||||| || ||||| |||| Sbjct 8421 TATCTTTAGACAAATCAATCTCCTCAGCAGTCCAAAAAGATGCCTCGGCTTTTTTGTACA 8362 Query 33845 TGTTCCAGAT 33854 | | ||| || Sbjct 8361 TATGCCATAT 8352 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622898734707840