Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Erysiphe_20necator_20[genbank_20GCA_5F000798735.1_202014-12-08] 6,224 sequences; 50,658,153 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq1089 98.7 9e-16 >seq1089 Length=20904 Score = 98.7 bits (108), Expect = 9e-16 Identities = 135/186 (73%), Gaps = 2/186 (1%) Strand=Plus/Minus Query 24015 ACTGGAAAATCGATTACCATCGAAGTCGAGGCCAACGACACCATCGAGCAAGTCAAACAA 24074 ||||| ||| | |||||| | || || ||| | ||||||||| || | || ||| Sbjct 4779 ACTGGTAAAACCATTACCCTTGAGGTAGAGTCATCCGACACCATTGATAATGTGAAAAGT 4720 Query 24075 AAGATTACCGACAAAGAAGGCATACCTCCCGATCAACAGAGACTGATTTACGGCGGCAAG 24134 || || ||||| ||||| || || ||||||||||| ||| | || | | ||||| Sbjct 4719 AAAATACAGGACAAGGAAGGAATTCCACCCGATCAACAAAGATTAATCTTTGCTGGCAAA 4660 Query 24135 CAACTCGAAGATGACAGAAACGTCAGC-GATTATAACATTCAAAAAGAATCTACAATTCA 24193 ||||| || |||| ||| | | | | ||||| |||||||||||||||||||| |||| Sbjct 4659 CAACTTGAGGATGGTCGAA-CATTATCTGATTACAACATTCAAAAAGAATCTACCCTTCA 4601 Query 24194 TTTAGT 24199 | |||| Sbjct 4600 TCTAGT 4595 Score = 96.9 bits (106), Expect = 3e-15 Identities = 150/212 (71%), Gaps = 2/212 (1%) Strand=Plus/Minus Query 24007 AAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAACGACACCATCGAGCAAG 24066 ||| | | || || ||| | ||||| ||||||||||| | |||||||| || | | Sbjct 4502 AAATAGTTACCGGTAAAACTATTACTCTCGAAGTCGAGTCTTCTGACACCATTGATAACG 4443 Query 24067 TCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAACAGAGACTGATTTACG 24126 ||||| || ||| || |||||||| || ||||| || |||||| || | || | | Sbjct 4442 TCAAAAGCAAAATTCAAGATAAAGAAGGAATTCCTCCGGACCAACAGCGATTAATATTTG 4383 Query 24127 GCGGCAAGCAACTCGAAGATGACAGAAACGTCAGC-GATTATAACATTCAAAAAGAATCT 24185 || || ||||| || |||| | ||| | | | | || || ||||| || |||||||| Sbjct 4382 CAGGAAAACAACTTGAGGATGGCCGAA-CTTTATCAGACTACAACATCCAGAAAGAATCC 4324 Query 24186 ACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 || ||||||||||| | | | |||||||| Sbjct 4323 ACTCTTCATTTAGTGCTTCGTCTAAGAGGAGG 4292 Score = 91.5 bits (100), Expect = 1e-13 Identities = 131/185 (71%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 24015 ACTGGAAAATCGATTACCATCGAAGTCGAGGCCAACGACACCATCGAGCAAGTCAAACAA 24074 ||||| ||| | || ||| | |||||||| | || || ||||| | || ||| Sbjct 5333 ACTGGCAAAACTATAACCCTTGAAGTCGAATCATCTGATACTATCGACAATGTAAAAAGC 5274 Query 24075 AAGATTACCGACAAAGAAGGCATACCTCCCGATCAACAGAGACTGATTTACGGCGGCAAG 24134 || ||| |||||||||||||| || || || ||||||||| |||||| || || ||| Sbjct 5273 AAAATTCAGGACAAAGAAGGCATCCCACCAGACCAACAGAGATTGATTTTCGCTGGAAAG 5214 Query 24135 CAACTCGAAGATGACAGAAACGTCAGCGATTATAACATTCAAAAAGAATCTACAATTCAT 24194 || | || |||| | ||| | ||| || || || ||||||||||| || |||| Sbjct 5213 CAGTTGGAGGATGGCCGAACACTTTCCGACTACAATATACAAAAAGAATCCACTCTTCAC 5154 Query 24195 TTAGT 24199 ||||| Sbjct 5153 TTAGT 5149 Score = 86.0 bits (94), Expect = 5e-12 Identities = 130/185 (70%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 24015 ACTGGAAAATCGATTACCATCGAAGTCGAGGCCAACGACACCATCGAGCAAGTCAAACAA 24074 ||||||||| | || || | || |||||| | ||||||||||| | || ||| Sbjct 5055 ACTGGAAAAACCATCACTCTAGAGGTCGAGTCGTCTGACACCATCGACAATGTAAAAAGT 4996 Query 24075 AAGATTACCGACAAAGAAGGCATACCTCCCGATCAACAGAGACTGATTTACGGCGGCAAG 24134 || || ||||||||||| || || ||||||||||| ||||| |||| | || || Sbjct 4995 AAAATACAAGACAAAGAAGGAATTCCACCCGATCAACAAAGACTAATTTTTGCTGGAAAA 4936 Query 24135 CAACTCGAAGATGACAGAAACGTCAGCGATTATAACATTCAAAAAGAATCTACAATTCAT 24194 ||||| || || | ||| | || |||||||| ||||||||||| ||| | || Sbjct 4935 CAACTTGAGGACGGTCGAACACTTTCTGACTATAACATCCAAAAAGAATCGACACTCCAC 4876 Query 24195 TTAGT 24199 || || Sbjct 4875 TTGGT 4871 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429903387204720