Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Erysiphe_20necator_20[genbank_20GCA_5F000798735.1_202014-12-08] 6,224 sequences; 50,658,153 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq1089 138 1e-27 seq359 116 3e-21 seq2354 84.2 2e-11 >seq1089 Length=20904 Score = 138 bits (152), Expect = 1e-27 Identities = 157/207 (76%), Gaps = 8/207 (4%) Strand=Plus/Minus Query 25023 ACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCTGACACTATCGA----GTCACTGAA 25078 ||||||||| | || || ||||||| ||||| |||||||| || || |||| || Sbjct 4494 ACCGGTAAAACTATTACTCTCGAAGTCGAGTCTTCTGACACCATTGATAACGTCAA--AA 4437 Query 25079 GCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCGG 25138 |||||| ||| || |||||||| ||||| || ||||||||||| | || ||||| || Sbjct 4436 GCAAAAT-TCAA-GATAAAGAAGGAATTCCTCCGGACCAACAGCGATTAATATTTGCAGG 4379 Query 25139 CAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAATATTCAAAAAGAATCCACGCT 25198 |||||| | || |||| || ||| | || ||||| || || ||||||||||| || Sbjct 4378 AAAACAACTTGAGGATGGCCGAACTTTATCAGACTACAACATCCAGAAAGAATCCACTCT 4319 Query 25199 ACATTTAGTGCTAAGGCTAAGAGGAGG 25225 ||||||||||| | ||||||||||| Sbjct 4318 TCATTTAGTGCTTCGTCTAAGAGGAGG 4292 Score = 109 bits (120), Expect = 5e-19 Identities = 152/209 (73%), Gaps = 8/209 (4%) Strand=Plus/Minus Query 25023 ACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCTGACACTATCGAGTCACTG----AA 25078 || || ||| | || || | ||||| || || ||||| |||||||| || || || Sbjct 5333 ACTGGCAAAACTATAACCCTTGAAGTCGAATCATCTGATACTATCGA--CAATGTAAAAA 5276 Query 25079 GCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCGG 25138 |||||| ||| ||||||||||| || ||||| ||||||||| | | ||||| || || Sbjct 5275 GCAAAAT-TCAG-GACAAAGAAGGCATCCCACCAGACCAACAGAGATTGATTTTCGCTGG 5218 Query 25139 CAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAATATTCAAAAAGAATCCACGCT 25198 || || || || |||| || || | ||| |||||||| |||||||||||||| || Sbjct 5217 AAAGCAGTTGGAGGATGGCCGAACACTTTCCGACTACAATATACAAAAAGAATCCACTCT 5158 Query 25199 ACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227 || ||||| ||| | || | || |||| Sbjct 5157 TCACTTAGTCCTACGTTTACGCGGTGGAA 5129 Score = 100 bits (110), Expect = 2e-16 Identities = 135/188 (72%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 25023 ACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCTGACACTATCGAGTCACTGAAGCAA 25082 || |||||| |||| || | || || ||||| || ||||| || || |||| Sbjct 4779 ACTGGTAAAACCATTACCCTTGAGGTAGAGTCATCCGACACCATTGATAATGTGAAAAGT 4720 Query 25083 AAAATCACTGACAAAGAAGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCGGCAAA 25142 ||||| ||||| ||||| |||||||| || ||||| | | || ||||| |||||| Sbjct 4719 AAAATACAGGACAAGGAAGGAATTCCACCCGATCAACAAAGATTAATCTTTGCTGGCAAA 4660 Query 25143 CAATTAGAAGATGATCGCACTGTGGGCGATTACAATATTCAAAAAGAATCCACGCTACAT 25202 ||| | || |||| ||| || | |||||||| |||||||||||||| || || ||| Sbjct 4659 CAACTTGAGGATGGTCGAACATTATCTGATTACAACATTCAAAAAGAATCTACCCTTCAT 4600 Query 25203 TTAGTGCT 25210 |||| || Sbjct 4599 CTAGTTCT 4592 Score = 98.7 bits (108), Expect = 9e-16 Identities = 137/190 (72%), Gaps = 4/190 (2%) Strand=Plus/Minus Query 25023 ACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCTGACACTATCGAGTCACTGAAGCAA 25082 || || ||| ||||||| | || || |||||||||||||| ||||| || || | || Sbjct 5055 ACTGGAAAAACCATCACTCTAGAGGTCGAGTCGTCTGACACCATCGA--CAATGTAAAAA 4998 Query 25083 --AAAATCACTGACAAAGAAGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCGGCA 25140 ||||| ||||||||||| |||||||| || ||||| | | |||||||| || | Sbjct 4997 GTAAAATACAAGACAAAGAAGGAATTCCACCCGATCAACAAAGACTAATTTTTGCTGGAA 4938 Query 25141 AACAATTAGAAGATGATCGCACTGTGGGCGATTACAATATTCAAAAAGAATCCACGCTAC 25200 ||||| | || || | ||| || | || || || || ||||||||||| || || | Sbjct 4937 AACAACTTGAGGACGGTCGAACACTTTCTGACTATAACATCCAAAAAGAATCGACACTCC 4878 Query 25201 ATTTAGTGCT 25210 | || || || Sbjct 4877 ACTTGGTCCT 4868 >seq359 Length=25150 Score = 116 bits (128), Expect = 3e-21 Identities = 165/230 (72%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || || || | || |||||| | || || | || |||||||| || Sbjct 13800 ATGCAAATTTTCGTGAAAACCCTCACGGGTAAAACTATTACGCTTGAGGTGGAGTCATCG 13741 Query 25059 GACACTATCGAGTCACTGAAGCA--AAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 ||||| ||||| || || | | ||||||| || || ||||| ||||||||||||| Sbjct 13740 GACACCATCGA--CAATGTAAAATCAAAAATCCAAGATAAGGAAGGCATTCCACCTGACC 13683 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 |||| || | |||||||| || |||||| | || || | || || || || |||| Sbjct 13682 AACAACGTTTGATTTTTGCGGGAAAACAACTCGAGGACGGCCGGACATTGTCTGACTACA 13623 Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGA 25226 | || ||||||||||| || || ||| | || || | || | |||||| Sbjct 13622 ACATCCAAAAAGAATCTACTCTTCATCTCGTACTTCGTCTTCGTGGAGGA 13573 >seq2354 Length=38096 Score = 84.2 bits (92), Expect = 2e-11 Identities = 126/179 (70%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 25008 TTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCTGACACTATC 25067 || || ||||| | || || ||| | ||||| | || || ||||| |||||||| || Sbjct 4174 TTCGTCAAGACCCTAACTGGCAAAACTATCACCTTAGAGGTTGAGTCCTCTGACACAATT 4233 Query 25068 GAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAACAGCGGATT 25127 || |||| ||| ||| || ||||| || || || ||||| ||||| || | Sbjct 4234 GATAATGTGAAAGCAAAGATCCAGGATAAAGAGGGAATCCCCCCTGATCAACAACGTTTG 4293 Query 25128 ATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAATATTCAAAA 25186 || ||||| || ||||| | ||||||| || ||| | ||||||||||||||||| Sbjct 4294 ATATTTGCTGGTAAACAGCTTGAAGATGGACGAACTCTTTCTGATTACAATATTCAAAA 4352 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433295129904560