Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Erysiphe_20necator_20[genbank_20GCA_5F000798735.1_202014-12-08] 6,224 sequences; 50,658,153 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq1089 140 7e-28 seq359 129 1e-24 seq2354 102 2e-16 >seq1089 Length=20904 Score = 140 bits (154), Expect = 7e-28 Identities = 130/165 (79%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 |||||||||||| |||||||| |||||||| |||| ||| |||| ||||| || | ||| Sbjct 5154 GTGAAGAGTGGATTCTTTTTGTATATTGTAGTCGGAAAGTGTTCGGCCATCCTCCAACTG 5213 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 ||| || ||||| || | || ||||||||||| || |||||||||||||| |||||||| Sbjct 5214 CTTTCCAGCGAAAATCAATCTCTGTTGGTCTGGTGGGATGCCTTCTTTGTCCTGAATTTT 5273 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGT 195101 || || || || || || || || ||| ||||||||||| Sbjct 5274 GCTTTTTACATTGTCGATAGTATCAGATGATTCGACTTCAAGGGT 5318 Score = 138 bits (152), Expect = 3e-27 Identities = 138/179 (77%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 194938 TGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGC 194997 ||||||||||| ||||| || || ||||| || | | ||||| ||||| || || || Sbjct 4316 TGAAGAGTGGATTCTTTCTGGATGTTGTAGTCTGATAAAGTTCGGCCATCCTCAAGTTGT 4375 Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057 || ||||| || || | ||| |||||||| |||||||| |||||||| ||||||||||| Sbjct 4376 TTTCCTGCAAATATTAATCGCTGTTGGTCCGGAGGAATTCCTTCTTTATCTTGAATTTTG 4435 Query 195058 TGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 |||||||| ||||||||||| ||| || ||||| || |||| || || || || Sbjct 4436 CTTTTGACGTTATCAATGGTGTCAGAAGACTCGACTTCGAGAGTAATAGTTTTACCGGT 4494 Score = 114 bits (126), Expect = 3e-20 Identities = 137/186 (74%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990 ||| || ||||| || || ||||||||||| |||||||| | | |||| ||||| || Sbjct 4594 AACTAGATGAAGGGTAGATTCTTTTTGAATGTTGTAATCAGATAATGTTCGACCATCCTC 4653 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 || || || || || ||||| | || |||||| || || ||||| ||||| ||||| || Sbjct 4654 AAGTTGTTTGCCAGCAAAGATTAATCTTTGTTGATCGGGTGGAATTCCTTCCTTGTCCTG 4713 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110 ||||| || || || ||||||||||| || || || |||||||||| || || Sbjct 4714 TATTTTACTTTTCACATTATCAATGGTGTCGGATGACTCTACCTCAAGGGTAATGGTTTT 4773 Query 195111 TCCTGT 195116 || || Sbjct 4774 ACCAGT 4779 Score = 95.1 bits (104), Expect = 3e-14 Identities = 129/180 (72%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 ||| || || || |||||||| || || || || | ||| |||| || || || || || Sbjct 4876 GTGGAGTGTCGATTCTTTTTGGATGTTATAGTCAGAAAGTGTTCGACCGTCCTCAAGTTG 4935 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 || || || || || |||| |||||| || || ||||| |||||||||||||| ||||| Sbjct 4936 TTTTCCAGCAAAAATTAGTCTTTGTTGATCGGGTGGAATTCCTTCTTTGTCTTGTATTTT 4995 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 || || || || |||||||| || || || || || || | || ||||| || Sbjct 4996 ACTTTTTACATTGTCGATGGTGTCAGACGACTCGACCTCTAGAGTGATGGTTTTTCCAGT 5055 >seq359 Length=25150 Score = 129 bits (142), Expect = 1e-24 Identities = 154/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || || |||||||| || |||||||| || ||||| || | | || | || || ||| Sbjct 13592 ACGAGATGAAGAGTAGATTCTTTTTGGATGTTGTAGTCAGACAATGTCCGGCCGTCCTCG 13651 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 || || || || || || || | ||||||||||| || ||||||||||| || ||||| Sbjct 13652 AGTTGTTTTCCCGCAAAAATCAAACGTTGTTGGTCAGGTGGAATGCCTTCCTTATCTTGG 13711 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 |||||| || || || || ||||||||||| ||||| ||||| |||| || || Sbjct 13712 ATTTTTGATTTTACATTGTCGATGGTGTCCGATGACTCCACCTCAAGCGTAATAGTTTTA 13771 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || | ||||| ||||| | |||||| Sbjct 13772 CCCGTGAGGGTTTTCACGAAAATTTGCAT 13800 >seq2354 Length=38096 Score = 102 bits (112), Expect = 2e-16 Identities = 130/179 (73%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 194953 TTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAGATA 195012 ||||||||||||||||| | |||||||| |||||||| ||||| ||||| || || || Sbjct 4352 TTTTGAATATTGTAATCAGAAAGAGTTCGTCCATCTTCAAGCTGTTTACCAGCAAATATC 4293 Query 195013 AGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCA 195072 | |||||||| || || || || || ||||| || || || ||| || || || ||| Sbjct 4292 AAACGTTGTTGATCAGGGGGGATTCCCTCTTTATCCTGGATCTTTGCTTTCACATTATCA 4233 Query 195073 ATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAA 195131 || ||||| || || || || | ||| | || || || || | || || ||||| Sbjct 4232 ATTGTGTCAGAGGACTCAACCTCTAAGGTGATAGTTTTGCCAGTTAGGGTCTTGACGAA 4174 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109393124389808