Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Erysiphe_20necator_20[genbank_20GCA_5F000798735.1_202014-12-08] 6,224 sequences; 50,658,153 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq125 383 2e-101 seq3947 205 1e-47 >seq125 Length=45052 Score = 383 bits (424), Expect = 2e-101 Identities = 665/963 (69%), Gaps = 14/963 (1%) Strand=Plus/Minus Query 47880 GCTATAGATGCTAGATTACATACAGCTACCTCATTTGGATTAGTATATTGTATTATTTCA 47939 |||| ||||| | |||||| ||||| || |||| ||| | |||| | ||||| Sbjct 27876 GCTAGGGATGCCAAATTACAAACAGCCACTTCATCCGGAGATGAGTATTCAACAATTTCG 27817 Query 47940 GCACATAGATTACCACATTTGATAGTACCCAAATTTTGATGATTATTNNNNTTGTTACAT 47999 | ||| |||||| | |||||| || | ||||| ||||| | || |||||| Sbjct 27816 GTACAAAGATTAGAGCTACGGATAGTCCCGAGATTTTTTTGATTGCTCTTTTTATTACAT 27757 Query 48000 GCGTCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCTATCTGAGATTCAATGATAGATTTC 48059 || || ||||| ||||||||||| || ||||||||| | || | ||| || || || | | Sbjct 27756 GCATCTTTGTAGAGCATAAAAGGGGTACCAGTTTCTGTTTGTGCTTCGATTATTGAGTAC 27697 Query 48060 CAAACAGTCCTAGCCTTTATAACAGCTCTAG---CTTTATTATCATGTTCGTATTTAGTA 48116 || | | ||| |||| || |||| |||| || ||||| || || | Sbjct 27696 CATAGCTTTTGTGCC---ATAATAGTTCTACGGCCTTTCCCTTCTTGTTCATACTTTTCA 27640 Query 48117 TATAACTTCTCAAATTCATCCCCATACACATTATCTAACCCAGGACATTCATTAGGACAC 48176 ||||| |||||||||||| |||||||||| | ||| |||||||||||| ||| ||| Sbjct 27639 TATAAAGCCTCAAATTCATCGCCATACACATCAGCTAGACCAGGACATTCACAAGGGCAC 27580 Query 48177 ATCAATGACCAATCCTCATCATTTTTTACTCTAGTCATAAATATATCTGGTATCCAAAGA 48236 |||| | ||| || ||| |||| ||||| ||||||| | ||| ||||||||||| Sbjct 27579 ATCAGAGTCCATTCACCATTTTTTTCAACTCTCTTCATAAAGAGATCAGGTATCCAAAGG 27520 Query 48237 GCTATA-AATAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCTTTTAAGTTCAAG 48295 || ||| |||| ||| | | | | |||||| ||||| ||| | || || || Sbjct 27519 GC-ATAGAATAGATCACGTGCACGAACTTCTTCTTTGCCGTGATTTTTGCGGAGGTCGAG 27461 Query 48296 AAAGTCCATTATATCAGCATGCCATGGTTCTAAATATATTGCCATTACACCTGGTCGTTT 48355 || || | |||||| || |||||||| || |||||||| || | | | || || || || Sbjct 27460 GAACTCAAATATATCGGCGTGCCATGGCTCCAAATATATAGCGAATGCTCCCGGACGCTT 27401 Query 48356 ATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAAT 48415 |||||| |||||||| | ||||||||||||||| || | |||| | ||| || ||||| Sbjct 27400 ATTACCACCTTGATCAACATATCTGGCAGTATTATTGAAGACTCGGAGCATCGGTACAAT 27341 Query 48416 ACCATTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTAT---ATTACT 48472 ||||||||| | ||||| ||||| | |||||| || | || | || || | | Sbjct 27340 ACCATTTGAGTTTCCATTTGTTCCTGCGATATAAGCACCTGTCGCGCGAATCCGATGAAT 27281 Query 48473 AATTGAAATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATC 48532 | || | || |||||||| || ||||||| || | ||| || ||| | ||||| Sbjct 27280 ATTT---AAGCCAATACCACCGGCATTTTTAGAAATCATAGCGCAAGTTTTCAAAGTATC 27224 Query 48533 ATAAATTCCTTCTATACTATCATCTATCATATTTAATAGAAAACAACTAGACATTTGCGG 48592 || ||||| || |||||||| ||| |||||| | || ||| || ||| | ||| | Sbjct 27223 GTAGATTCCATCAATACTATCCTCTTTCATATCAATTAAAAAGCATGAAGAGAGTTGAGA 27164 Query 48593 ATGACAAGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAA 48652 || ||| || | ||||| || || || ||||| |||| |||| | || | Sbjct 27163 TTGTGGAGTACCGGCTGCAAATAGAGTAGGGGAAGCATGCGTAAAGTATTTATTGGACAT 27104 Query 48653 CAATTTATATGTTTCAATAACAGAATCTATATCCCATTGATGTATACCTATAGATACACG 48712 | ||||| || || ||| |||| || || || ||| || || || | || ||||| Sbjct 27103 TAGATTATAAGTCTCTATAGCAGATTCAATGTCATCTTGGTGAATTCCAACAGCGACACG 27044 Query 48713 CATTAACATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGATTT 48772 ||||| ||||| ||| || | || |||||||| | ||| | | |||||||||| | Sbjct 27043 CATTATCATATGTTGTGGCCGCTCCACAATTTTATCATTGAGGCGAAGAAGATATGATCT 26984 Query 48773 TTCCAATGTTTTAAAACCAAAATAGTTGTATGAAAAGTCGTTATCATTAATAATTGATGA 48832 ||||| || || || |||||||| | ||| |||||| ||||| || || | || Sbjct 26983 TTCCAGAGTCTTGAAGCCAAAATACTGGTAATTAAAGTCTCGATCATAAACTATCGCGGA 26924 Query 48833 ATT 48835 ||| Sbjct 26923 ATT 26921 Score = 143 bits (158), Expect = 3e-29 Identities = 301/444 (68%), Gaps = 11/444 (2%) Strand=Plus/Minus Query 47013 GTTCGTAAATAATACATACCAGTCTTTAAACCTAAACTCCATCCATAGAAATGCATACTA 47072 || |||| || ||||| ||||| ||||| ||||| |||||||| ||||||||||| Sbjct 28752 GTACGTAGGTAGTACATGCCAGTTTTTAAGCCTAATTTCCATCCAGCAAAATGCATACTT 28693 Query 47073 GTTAATTTAGAATAACTAGGTTCTGAAATATGAATATTAAGAGATTGACTCTGATCAATA 47132 |||| ||| | | || ||| | |||||||| | || || |||||||||| Sbjct 28692 GTTATTTTGCCCATAGTTGGGTCTTTCAAGTGAATATTCATTGACTGTGACTGATCAATA 28633 Query 47133 AATGCACCTCTATCAGCTGCCATATCTAAAATAACCCTTTGTGGTATCTCCCATACTGTT 47192 |||||||| | |||||| ||||| | | || | |||| |||||||| |||||| Sbjct 28632 AATGCACCACGATCAGCAGCCATCTGAATTATGGTGCGCTGTGAGATCTCCCAAACTGTT 28573 Query 47193 TTATAAATTTGTTTAATGTCTTCTGGGAGATTAG---TATTTTGAATAGATCCTCCgttt 47249 || || | | |||||| || |||| | ||| | |||| |||||||| ||||| | Sbjct 28572 TTGTAGAGTGCTTTAATTTCGGCTGGAATATTTGATATATTCTGAATAGAGCCTCCATCA 28513 Query 47250 tctataattttgttttttaattcatttgacca-aag---ttttcgttcagttaatgtttt 47305 ||| || ||||| | | || ||||| ||| | || ||| || ||| Sbjct 28512 GATATGATGCGATTTTTCATGTTATCAGACCATAAGCCCATATCTACCAG---ATCTTTG 28456 Query 47306 taaAAGATGAGGATTAACAATTTGAAATTCTCCAGATAGTACTCTACGGCTATATATATT 47365 || | ||||| ||||||||||| ||||| | || || | || |||||||| Sbjct 28455 AGTAACCAG-GGATTTACAATTTGAAACTCTCCTGCTAAAACACGGCGTGAGTATATATT 28397 Query 47366 ACTTGTATATGGTTCTATAGATTCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGG 47425 | |||||||| || | | | |||||| ||||| ||||||| || ||| || || Sbjct 28396 AGAGGTATATGGCTCAAAACACTCATTAAATCCAAGAATTTGACTTGTACTTGCGGTTGG 28337 Query 47426 CATGGATGCAACTAATAAGCTATT 47449 ||| | || || | ||||||||| Sbjct 28336 CATTGGGGCTACGAGTAAGCTATT 28313 >seq3947 Length=15482 Score = 205 bits (226), Expect = 1e-47 Identities = 591/917 (64%), Gaps = 67/917 (7%) Strand=Plus/Minus Query 18657 CATTACTCCCATTTTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTC 18716 ||| ||||| |||||||| || | |||| |||||| || || ||||| || || | Sbjct 9260 CATCACTCCGGCCTTTTGATAGTCACCTACTCGTTTTTCGAAAAAGTTAGTCTTCCCAGC 9201 Query 18717 TAATGATATACATTCCATAAAATCAAATGGATTTTTTACATTATATAtttttttGAAT-- 18774 || || ||| |||||| ||||||||||||||||| || || |||| ||| |||| Sbjct 9200 CAAAGAGATATTTTCCATGAAATCAAATGGATTTTTGACTTTGTATACTTTG--GAATTT 9143 Query 18775 CCTAATTCTAATAGTAGTCTATCCGCTACAAATTTAATATATGTGTTCATCATATCACAA 18834 ||||| | || |||| ||| || || |||| || || ||||||| | Sbjct 9142 CCTAACGAGAGGAGAAGTCGATCTGCAACGAATTCGATGTACTGCTTCATCAGAGTGGCG 9083 Query 18835 TTCATTCCTATTAATTTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACT 18894 ||||| || | || || || || || || ||||||||||||||||| | || Sbjct 9082 TTCATGCCGAGTAGAGCGCATGGCAGCGCTTCAGTTAGAAATTCTTGTTCTATCTCGACG 9023 Query 18895 GCCTCTGATATAATAGATACAACTCTATCTTCATTAGGAGG---GTATAGAAGATGTTTA 18951 || | || |||| | ||| || | |||| || || | |||| | Sbjct 9022 GCTTGTGTGATAACATCCTGAACAGA--CTGC-TTAGATGGTCTGTGCTTCAAATGTGAA 8966 Query 18952 AACATCAAACATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAA 19011 || | | ||| ||||| || ||||| || ||||| | || | ||| |||||| Sbjct 8965 AAGAGGAGACAAGCAAAGTCCGTGTGTAGGCCTTCGTCACGTGAAATAAGTTCGTTAGAA 8906 Query 19012 AATGTTAAACCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCA 19071 || |||| |||| ||||| |||| ||| || ||||| || || |||||||| || ||| Sbjct 8905 AAGGTTAGGCCAGCCATCAACCCTCGTTTCTTCAACCAAAAAATGGAAGCAAAGGAACCA 8846 Query 19072 GAAAAGAATATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCA 19131 || ||||| || || ||||| |||||||| || || | || |||| | | | || Sbjct 8845 CTGAAAAATATTCCCTCCACTGCAGCAAAAGCTACAAGACGTTGTCCAAATGTCGACTCT 8786 Query 19132 TTATTATGAATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCA-------- 19183 || | |||||||| | ||||| |||| ||| || || | ||| || | Sbjct 8785 TTGTCTTGAATCCAACGGACGGCCCAGTCAGACTTTTTCTTAATACAAGGTACTATGAAT 8726 Query 19184 ----------------------------------------TTGTCTCTATAGAATTAAAT 19203 ||||||| |||| ||| || Sbjct 8725 CGTTAACGATTATCGCGATAGTGTGGGAAATGGGAATTACTTGTCTCGATAGCATTGAAA 8666 Query 19204 AGATACATACGCTCATCTGTATCTTTAACATATGCATCTATCAATAAACTGTACATTTCT 19263 ||||| | | | || |||||| | || | ||| || || | || |||| Sbjct 8665 AGATAAGTTTTTTGAGCTTGATCTTTTATGTAAGTATCGATTAAAAGCGAATAAGTTTCA 8606 Query 19264 GAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGT 19323 || || |||||||| || || |||||||| ||||| |||| || || | ||||| Sbjct 8605 GAGTGGATATTTTCCATCATAATTTGAAATCCATAAAAGAATCTAGCCTCAGGAATCTGC 8546 Query 19324 ACTTCACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAA 19383 |||||||| | ||| | ||||| | ||||||||||| || || || || |||||| Sbjct 8545 ACTTCACTGCTAAACCGCTCGACGAGGTTTTCATTAACAATCCCGTCTGAGGCGGCAAAA 8486 Query 19384 AATGCTAATACATGTTTAATAAAATGTTTTTCATC-----TGAGGTTAATGT-ATTCCAA 19437 || |||| ||||| ||||| | | |||||| |||| | || ||||||| Sbjct 8485 AAGGCTAGCACATGAGATATAAAGTATCGTTCATCATCATTGAG---ACGGTTATTCCAA 8429 Query 19438 TCATTAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTT 19497 || | |||||||||||| ||||| | || ||| | ||||||||||| ||||| |||||| Sbjct 8428 TCGTGAATATCTTTAGACAAATCAATCTCCTCAGCAGTCCAAAAAGATGCCTCGGCTTTT 8369 Query 19498 TTATACATGTTCCATAT 19514 || ||||| | |||||| Sbjct 8368 TTGTACATATGCCATAT 8352 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562065067935360