Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Erysiphe_20necator_20[genbank_20GCA_5F000798735.1_202014-12-08] 6,224 sequences; 50,658,153 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq3999 262 3e-64 seq359 131 1e-24 seq1089 123 2e-22 seq2545 116 3e-20 seq2354 107 2e-17 seq1392 104 2e-16 >seq3999 Length=8412 Score = 262 bits (290), Expect = 3e-64 Identities = 540/799 (68%), Gaps = 7/799 (1%) Strand=Plus/Minus Query 551790 GGAGATTCTCATCTTGGTGGCGAAGATTTTGATAATAGACTGGT--ATCATGGTGTGTTG 551847 |||||| |||| | || || |||||||| || || |||| || | || | ||| Sbjct 2556 GGAGATACTCACTTGGGAGGAGAAGATTTCGACAACCGACTCGTCAACCAC--TTTGTAA 2499 Query 551848 AAGATTTTAAACGAAAAAACAAAGTTGATCTATCTACATCTGCCAAAGCTCTTCGTCGTC 551907 | || ||||| || ||| |||| ||| ||||| || || | ||| || | |||| Sbjct 2498 ATGAGTTTAAGCGCAAACACAAGAAAGATTTATCTTCAAACGCTAGAGCACTAAGACGTC 2439 Query 551908 TAAGAACTGCTTGCGAAAGAGCCAAACGAGCTCTTTCATCTGGTACTCAAACCACTATTG 551967 | |||| || || ||| |||| |||||| | || || || | | || || | || | Sbjct 2438 TTCGAACCGCATGTGAACGAGCAAAACGAACACTATCCTCATCTGCCCAGACATCCATCG 2379 Query 551968 AAGTAGATTCATTATTTGAGGGAATTGATTATAATACGCCTATTTCGAGGGCCAAATTTG 552027 || | |||||| ||||||| || || || | |||| | ||| | | || |||| Sbjct 2378 AAATTGATTCACTATTTGAAGGTATCGACTTCTATACATCCATTACCCGAGCTCGTTTTG 2319 Query 552028 AAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCAGTAGAACAAGTTTTAAGAG 552087 | || | || || || || ||| || | | |||||||| | ||| || | Sbjct 2318 AGGAACTCTGCCAAGACCTTTTCAGATCTACCACTACCCCAGTAGATCGTGTTCTAGCTG 2259 Query 552088 ATTCAAAGATTGATAAATCCAAAGTACATGAAATTGTGCTTGTTGGTGGATCTACAAGAA 552147 | | || ||||| ||||| || |||||||| ||||| || ||||||||||| || ||| Sbjct 2258 ACGCCAAAATTGACAAATCAAAGGTACATGAGATTGTTCTAGTTGGTGGATCAACGCGAA 2199 Query 552148 TTCCTAAAATTCGCGAAATGTTAAGTTCTTATTTCAATGGTAAAAAATTAAATGAAAGTG 552207 |||| | || | || | | | |||||||||||| ||| || ||| || Sbjct 2198 TTCCCAGGATCCAAAAACTTATCACGGATTATTTCAATGGCAAAGAACCCAATAAATCAA 2139 Query 552208 TTAATCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAGCAGCTATTCTTTCTGGAC 552267 | ||||| ||||| || || || |||||||| || | ||||| || ||| | || || Sbjct 2138 TCAATCCTGATGAAGCAGTAGCTTATGGTGCTGCGGTCCAAGCTGCAATTTTGTCAGGTG 2079 Query 552268 AAAC-TGATGAAAAACTACAAA--ATATTGTACTTGTAGATGTTACTCCTCTATCTCTTG 552324 | || | | || | ||||| | || |||| | ||||| | || || || || | Sbjct 2078 ATACATCTTCTAAGTCCACAAATGAAATCCTACTACTCGATGTCGCACCACTCTCACTCG 2019 Query 552325 GTTTAGAAACAGTTGGAGGTATTATGACTAATCTTATCGATAGAAATACTACTATTCCTT 552384 | ||||||| | ||| || ||||| || | || |||||| |||||||| || Sbjct 2018 GAATAGAAACCGCTGGTGGGCAGATGACCAAATTGATTCCTAGAAACACTACTATCCCCA 1959 Query 552385 GTAAAAAATCTCGTGTATTTTCTACGTATTCAGATAATCAAACTGCTGTTACAATTCAAA 552444 ||| || ||| |||||||| || || || || |||||| ||| |||| || ||| Sbjct 1958 CTAAGAAGTCTGAAGTATTTTCAACTTACTCTGACAATCAACCTGGTGTTCTCATACAAG 1899 Query 552445 TTTTTGAAGGAGAAAGAAAATTCACTAAAGATAATAATCAACTTGGTACTTTTAATTTAG 552504 ||||||| || || || || || ||||| || |||| ||||||| ||| | ||| Sbjct 1898 TTTTTGAGGGTGAGCGACAACGAACAAAAGACAACAATCTCCTTGGTAAATTTGAGTTAA 1839 Query 552505 AAGGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTTCGATATCGATG 552564 || ||||| ||||| || ||||| ||||| ||||| || |||||||| ||| | |||| Sbjct 1838 CTGGAATTCCACCTGCCCCACGTGGTGTACCCCAAATAGAGGTTACTTTTGATTTGGATG 1779 Query 552565 CCAATGGAATTTTGAATGT 552583 | || |||||| ||||||| Sbjct 1778 CAAACGGAATTATGAATGT 1760 Score = 251 bits (278), Expect = 6e-61 Identities = 410/588 (70%), Gaps = 2/588 (0%) Strand=Plus/Minus Query 549995 ATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAAGTT 550054 |||||||| ||||||||||| ||||| |||||||||| ||| | ||| | | || Sbjct 3207 ATAGGTATCGATTTAGGAACTACATACTCTTGTGTTGGTATTTTCAGAGATGATCGAATT 3148 Query 550055 GAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACGGAA 550114 ||||| || |||||||| ||||| || ||||||| || || | ||| | || ||||| Sbjct 3147 GAAATCATCGCCAATGACCAAGGAAATCGAACTACACCTTCCTTTGTAGCATTTACGGAT 3088 Query 550115 ACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAATACT 550174 ||||||| ||| |||||||||| || ||| |||||| | | ||||| ||||| || Sbjct 3087 ACTGAACGCTTAATTGGTGATGCTGCTAAAAATCAAGTCGCAATGAATCCAACCAACACA 3028 Query 550175 ATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGCAGAT 550234 ||||||| || |||||| | || || ||| ||| || | || || | ||| Sbjct 3027 GTTTTTGACGCCAAACGTCTGATAGGCCGAAAGTTTGCCGACCCTGAAGTACAATCTGAT 2968 Query 550235 ATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTATATTGAAGCTACT 550294 |||||||| | || ||| | || || | |||| ||||| || |||| | | Sbjct 2967 ATGAAGCACTTCCCATTCAAGATAGTAGACAAGGCTGGCAAACCAGTCATCGAAGTTG-T 2909 Query 550295 CATGAA-GGATCTGTTAAACAATTTTCACCAGAACAAATTTCATCTATGGTTTTAATGAA 550353 | | || ||| ||||| || |||| ||| |||| || || ||||| | | || Sbjct 2908 CTTCAAAGGAGAGACCAAACAGTTCACACCTGAAGAAATCTCTTCCATGGTACTCACCAA 2849 Query 550354 AATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAAGTTACGGATGCAGTAATAACTGT 550413 |||||| | || || || | | | ||| | ||||| |||| || |||| || Sbjct 2848 AATGAAGGAGACGGCAGAGGCGTATCTAGGTACACAAGTTGACAATGCTGTCGTAACAGT 2789 Query 550414 ACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATTGCTGG 550473 || || || || ||||| || ||| | |||||||| |||||||| || | ||||||||| Sbjct 2788 GCCTGCGTACTTCAATGATTCTCAAAGACAAGCTACCAAAGATGCAGGTCTTATTGCTGG 2729 Query 550474 ACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGACTTGA 550533 ||| |||||||| ||||| || ||||| || || |||||||| |||| || || ||||| Sbjct 2728 ACTAAATGTTCTCCGTATCATTAATGAGCCCACAGCTGCTGCTATTGCGTACGGTCTTGA 2669 Query 550534 TAAACATAATGATCAAGAACTTAATGTACTCATCTTTGATTGTGGAGG 550581 || | || ||| ||||||||||||||||| | ||||| Sbjct 2668 CAAGAAGGTCGAGGGAGAGAGAAATGTACTCATCTTTGACTTAGGAGG 2621 >seq359 Length=25150 Score = 131 bits (144), Expect = 1e-24 Identities = 162/219 (74%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 563257 AGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTT 563316 ||||| ||||| |||||||| ||| |||||| || ||||| |||| | || | Sbjct 13583 AGACGAAGTACGAGATGAAGAGTAGATTCTTTTTGGATGTTGTAGTCAGACAATGTCCGG 13642 Query 563317 GAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCT 563376 || || ||||||||||| |||||||| | | ||| || ||||| ||||| ||||| Sbjct 13643 CCGTCCTCGAGTTGTTTTCCCGCAAAAATCAAACGTTGTTGGTCAGGTGGAATGCCTTCC 13702 Query 563377 TTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCGAGAGT 563435 |||||||| |||||| |||||| || || || || | ||| | || || || || Sbjct 13703 TTATCTTGGATTTTTGATTTTACATTGTCGATGGTGTCCG-ATGACTCCACCTCAAGCGT 13761 Query 563436 AACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 || ||||||||| || || ||||| |||||||||||||| Sbjct 13762 AATAGTTTTACCCGTGAGGGTTTTCACGAAAATTTGCAT 13800 >seq1089 Length=20904 Score = 123 bits (136), Expect = 2e-22 Identities = 149/200 (75%), Gaps = 2/200 (1%) Strand=Plus/Plus Query 563254 CTGAGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTT 563313 || ||||| || || | |||||| || |||||| || ||||| || | || |||| Sbjct 4298 CTTAGACGAAGCACTAAATGAAGAGTGGATTCTTTCTGGATGTTGTAGTCTGATAAAGTT 4357 Query 563314 CTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCT 563373 | ||| |||||||||||||| ||||| || | || || || || |||||||||||| Sbjct 4358 CGGCCATCCTCAAGTTGTTTTCCTGCAAATATTAATCGCTGTTGGTCCGGAGGAATTCCT 4417 Query 563374 TCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCGAG 563432 ||||||||||||||||| ||| || ||||| || |||| || | | |||||| Sbjct 4418 TCTTTATCTTGAATTTTGCTTTTGACGTTATCAATGGTGTCAG-AAGACTCGACTTCGAG 4476 Query 563433 AGTAACAGTTTTACCAGTAA 563452 ||||| ||||||||| |||| Sbjct 4477 AGTAATAGTTTTACCGGTAA 4496 Score = 123 bits (136), Expect = 2e-22 Identities = 147/197 (75%), Gaps = 2/197 (1%) Strand=Plus/Plus Query 563257 AGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTT 563316 |||||||| || |||||||||||| |||||| ||| |||||||||| || |||| Sbjct 4586 AGACGGAGAACTAGATGAAGGGTAGATTCTTTTTGAATGTTGTAATCAGATAATGTTCGA 4645 Query 563317 GAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCT 563376 ||| ||||||||||| || ||||| || | |||||| ||||| || ||||||||||| Sbjct 4646 CCATCCTCAAGTTGTTTGCCAGCAAAGATTAATCTTTGTTGATCGGGTGGAATTCCTTCC 4705 Query 563377 TTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAG-TGTGAGTACATTCGAGAGT 563435 || || || ||||| ||| || ||||| || || | || ||| || || || Sbjct 4706 TTGTCCTGTATTTTACTTTTCACATTATCAATGGTGTCGGATGACTCTAC-CTCAAGGGT 4764 Query 563436 AACAGTTTTACCAGTAA 563452 || ||||||||||||| Sbjct 4765 AATGGTTTTACCAGTAA 4781 Score = 100 bits (110), Expect = 2e-15 Identities = 141/194 (73%), Gaps = 3/194 (2%) Strand=Plus/Plus Query 563282 TTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTTGAATCTTCAAGTTGTTTTCCGGCAA 563341 || |||| ||| | |||||||| ||||| | | |||||||||||| ||||| |||| Sbjct 4099 TTCCTTTTGTA-TGTTGTAATCGTTAAGAGTACGTCCATCTTCAAGTTGCTTTCCAGCAA 4157 Query 563342 AAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTTGTTTTACTG 563401 | || | |||||| || || || ||||| |||||||||||||| || || ||| || Sbjct 4158 AGATCAATCTTTGTTGGTCCGGTGGAATACCTTCTTTATCTTGGATCTTACTTTTGACGT 4217 Query 563402 CCTCAATTGTATCAG-TGTGAGTACATTCGAGAGTAACAGTTTTACCAGTAAGAGTTTTA 563460 || |||||||| | | ||| ||| ||||| | ||||| ||||| | ||||| Sbjct 4218 TGTCTATTGTATCTGAAGATTCTAC-TTCAAGAGTTATTGTTTTCCCAGTCAATGTTTTG 4276 Query 563461 ACGAAAATTTGCAT 563474 || || || ||||| Sbjct 4277 ACAAATATCTGCAT 4290 Score = 96.9 bits (106), Expect = 3e-14 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 563257 AGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTT 563316 ||||| || || | || || || |||||| || || || |||| || |||| Sbjct 4862 AGACGAAGGACCAAGTGGAGTGTCGATTCTTTTTGGATGTTATAGTCAGAAAGTGTTCGA 4921 Query 563317 GAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCT 563376 || |||||||||||||| |||||||| |||||||| ||||| || |||||||||||| Sbjct 4922 CCGTCCTCAAGTTGTTTTCCAGCAAAAATTAGTCTTTGTTGATCGGGTGGAATTCCTTCT 4981 Query 563377 TTATCTTGAATTTTTTGTTTTAC 563399 || ||||| ||||| |||||| Sbjct 4982 TTGTCTTGTATTTTACTTTTTAC 5004 >seq2545 Length=48213 Score = 116 bits (128), Expect = 3e-20 Identities = 115/149 (77%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 550389 AAGTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTA 550448 |||| || ||||||| ||||||| || ||||| |||||||| || | ||||||| Sbjct 25551 AAGTCACTCATGCAGTTGTAACTGTTCCTGCATACTTTAATGATAATCAGAGACAAGCTA 25610 Query 550449 CTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTG 550508 |||||||||| ||| || ||||| ||||| || || |||||| | |||||||| |||| Sbjct 25611 CTAAAGATGCCGGAACCATAGCTGGCCTTAACGTACTCCGTATTGTGAATGAACCAACTG 25670 Query 550509 CTGCTGCACTTGCATATGGACTTGATAAA 550537 | || || |||| || || ||||||||| Sbjct 25671 CGGCAGCTATTGCGTACGGTCTTGATAAA 25699 Score = 96.9 bits (106), Expect = 3e-14 Identities = 122/167 (73%), Gaps = 3/167 (2%) Strand=Plus/Plus Query 549986 AAAGTAGCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAAT 550045 |||||| || || || ||| | || ||||||||| |||||||||||| |||||| Sbjct 25098 AAAGTA---ATTGGAATTGATCTTGGCACCACATATTCTTGTGTTGGTGTAATGCAAAAA 25154 Query 550046 GGTAAAGTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCT 550105 || |||||||| ||| | | ||||| ||||| || ||| ||||| || ||||| || Sbjct 25155 GGCAAAGTTGAGATTTTAGTTAATGACCAAGGAAATCGAATCACTCCCTCATATGTCGCT 25214 Query 550106 TTCACGGAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGC 550152 || || || ||| | ||||||| ||||| |||||| | || || Sbjct 25215 TTTACCGACGATGAGCGCCTAGTTGGAGATGCGGCAAAAAACCAGGC 25261 >seq2354 Length=38096 Score = 107 bits (118), Expect = 2e-17 Identities = 139/188 (74%), Gaps = 3/188 (2%) Strand=Plus/Minus Query 563279 TACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTTGAATCTTCAAGTTGTTTTCCGG 563338 |||| |||| | |||||||||||||| ||||||| | ||||||||| ||||| || | Sbjct 4359 TACTACCTTTTG-AATATTGTAATCAGAAAGAGTTCGTCCATCTTCAAGCTGTTTACCAG 4301 Query 563339 CAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTTGTTTTA 563398 |||| || | | ||| |||||||| || ||||| |||||||| || || ||| ||| | Sbjct 4300 CAAATATCAAACGTTGTTGATCAGGGGGGATTCCCTCTTTATCCTGGATCTTTGCTTTCA 4241 Query 563399 CTGCCTCAATTGTATCAGTGTGAGT-ACATTCGAGAGTAACAGTTTTACCAGTAAGAGTT 563457 | |||||||| |||| | || | | || | || | |||||| ||||| || || Sbjct 4240 CATTATCAATTGTGTCAGAG-GACTCAACCTCTAAGGTGATAGTTTTGCCAGTTAGGGTC 4182 Query 563458 TTAACGAA 563465 || ||||| Sbjct 4181 TTGACGAA 4174 >seq1392 Length=24511 Score = 104 bits (114), Expect = 2e-16 Identities = 117/157 (75%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 550390 AGTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTAC 550449 ||||| |||| || ||||||| ||||||||||| ||||| ||||| || |||||||| Sbjct 10148 AGTTAAAAATGCCGTTGTAACTGTTCCAGCATATTTCAATGATTCACAGCGACAAGCTAC 10207 Query 550450 TAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGC 550509 |||||||||||| | || ||||| | ||| || ||| || | ||||| || ||||| Sbjct 10208 TAAAGATGCTGGTCAAATAGCTGGCTTGTCTGTACTACGTGTTGTAAATGAGCCAACTGC 10267 Query 550510 TGCTGCACTTGCATATGGACTTGATAAACATAATGAT 550546 ||||| | || || || | || ||| || | ||| Sbjct 10268 AGCTGCTTTAGCCTACGGCTTGGAAAAAGATGAAGAT 10304 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4028966846809760