Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Erysiphe_20necator_20[genbank_20GCA_5F000798735.1_202014-12-08] 6,224 sequences; 50,658,153 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq3947 140 5e-28 seq1089 134 2e-26 >seq3947 Length=15482 Score = 140 bits (154), Expect = 5e-28 Identities = 227/324 (70%), Gaps = 7/324 (2%) Strand=Plus/Minus Query 18384 TCTCTATAGCATTAAACAAATCATCTTTTTCT--TTGGAATCTTTTATATAAGTGTCGAT 18441 |||| |||||||| || | || | ||||| ||| ||||||||| ||||| ||||| Sbjct 8682 TCTCGATAGCATTGAAAAGATAAGTTTTTTGAGCTTG--ATCTTTTATGTAAGTATCGAT 8625 Query 18442 TAACAAAGAATACATTTCAGAATGTATGCTTTCCATAGCTATCTGAAAACTATAAAACGA 18501 ||| | ||||| ||||||| || || ||||||| || ||||| | |||||| | Sbjct 8624 TAAAAGCGAATAAGTTTCAGAGTGGATATTTTCCATCATAATTTGAAATCCATAAAAGAA 8565 Query 18502 TCTAGCCTCGGGATATTGAATCTCGCTATAAAATCTTTCTACCAAATTCTCATTAACTAT 18561 ||||||||| ||| || | || || ||| | || || | || |||||||| || Sbjct 8564 TCTAGCCTCAGGAATCTGCACTTCACTGCTAAACCGCTCGACGAGGTTTTCATTAACAAT 8505 Query 18562 ACCGTCAGCAGATGCGAAAAATGCCAAAACATATTTAATGAAATGTTTTTCATTATCCTT 18621 ||||| | | || ||||| || | |||| || || | | ||||| ||| || Sbjct 8504 CCCGTCTGAGGCGGCAAAAAAGGCTAGCACATGAGATATAAAGTATCGTTCATCATCATT 8445 Query 18622 GAGA---TTGTTCCATTCATCTATATCTTTTGATAGATCAACTTCTTCCGATGTCCAAAA 18678 |||| || ||||| || | |||||||| || | ||||| || || | |||||||| Sbjct 8444 GAGACGGTTATTCCAATCGTGAATATCTTTAGACAAATCAATCTCCTCAGCAGTCCAAAA 8385 Query 18679 AGATGATTCGGCCTGTTTGTACAT 18702 ||||| ||||| | ||||||||| Sbjct 8384 AGATGCCTCGGCTTTTTTGTACAT 8361 >seq1089 Length=20904 Score = 134 bits (148), Expect = 2e-26 Identities = 158/211 (75%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| |||||| | |||||||||||||| ||||| || || | ||||| ||| ||| Sbjct 4290 ATGCAGATATTTGTCAAAACATTGACTGGGAAAACAATAACTCTTGAAGTAGAATCTTCA 4231 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| || ||||| |||| ||| || |||||||||||||| || || || || ||| Sbjct 4230 GATACAATAGACAACGTCAAAAGTAAGATCCAAGATAAAGAAGGTATTCCACCGGACCAA 4171 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACT-TTATCAGATTATAA 156001 ||||||||||| | ||| || ||||| || |||||| | ||| ||| | ||||| || Sbjct 4170 CAAAGATTGATCTTTGCTGGAAAGCAACTTGAAGATGGACGTACTCTTAAC-GATTACAA 4112 Query 156002 TATATCCAAAGAGGCGACGCTTCATTTAGTG 156032 ||| || || |||| || || |||||| Sbjct 4111 CATACAAAAGGAATCGACTCTCCACTTAGTG 4081 Score = 129 bits (142), Expect = 9e-25 Identities = 155/211 (73%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 155839 AAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCTGATAATATTTTAAACG 155898 ||| | | || || ||||||||||| | |||||||| |||||| | ||| |||| Sbjct 4502 AAATAGTTACCGGTAAAACTATTACTCTCGAAGTCGAGTCTTCTGACACCATTGATAACG 4443 Query 155899 TGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAACAAAGATTGATTTATG 155958 | |||| ||||| |||||||||||||| || ||||| || ||||| |||| || | || Sbjct 4442 TCAAAAGCAAAATTCAAGATAAAGAAGGAATTCCTCCGGACCAACAGCGATTAATATTTG 4383 Query 155959 CCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAATATATCCAAAGAGGCGA 156018 | || || || || || ||| | ||||||||||||| || || || ||||| | | Sbjct 4382 CAGGAAAACAACTTGAGGATGGCCGAACTTTATCAGACTACAACATCCAGAAAGAATCCA 4323 Query 156019 CGCTTCATTTAGTGTTAAGATTAAGAGGCGG 156049 | |||||||||||| | | ||||||| || Sbjct 4322 CTCTTCATTTAGTGCTTCGTCTAAGAGGAGG 4292 Score = 118 bits (130), Expect = 2e-21 Identities = 148/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 155847 ACTGGAAAAACTATTACATTAGAAGTCGAAGATTCTGATAATATTTTAAACGTGAAAAAT 155906 ||||| |||||||| || | ||||||||| ||||||| ||| || || |||| Sbjct 5333 ACTGGCAAAACTATAACCCTTGAAGTCGAATCATCTGATACTATCGACAATGTAAAAAGC 5274 Query 155907 AAAATACAAGATAAAGAAGGCATACCTCCAGAACAACAAAGATTGATTTATGCCGGTAAG 155966 ||||| || || ||||||||||| || ||||| ||||| |||||||||| || || ||| Sbjct 5273 AAAATTCAGGACAAAGAAGGCATCCCACCAGACCAACAGAGATTGATTTTCGCTGGAAAG 5214 Query 155967 CAGCTCGAAGATACCAGAACTTTATCAGATTATAATATATCCAAAGAGGCGACGCTTCAT 156026 ||| | || ||| | |||| | || || || |||||| ||||| | || ||||| Sbjct 5213 CAGTTGGAGGATGGCCGAACACTTTCCGACTACAATATACAAAAAGAATCCACTCTTCAC 5154 Query 156027 TTAGTGTTAAGATTAAGAGGCGG 156049 ||||| || | ||| | || || Sbjct 5153 TTAGTCCTACGTTTACGCGGTGG 5131 Score = 91.5 bits (100), Expect = 2e-13 Identities = 131/185 (71%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 155847 ACTGGAAAAACTATTACATTAGAAGTCGAAGATTCTGATAATATTTTAAACGTGAAAAAT 155906 ||||| ||||| ||||| | || || || || || | ||| || ||||||| | Sbjct 4779 ACTGGTAAAACCATTACCCTTGAGGTAGAGTCATCCGACACCATTGATAATGTGAAAAGT 4720 Query 155907 AAAATACAAGATAAAGAAGGCATACCTCCAGAACAACAAAGATTGATTTATGCCGGTAAG 155966 |||||||| || || ||||| || || || || ||||||||||| || | ||| || || Sbjct 4719 AAAATACAGGACAAGGAAGGAATTCCACCCGATCAACAAAGATTAATCTTTGCTGGCAAA 4660 Query 155967 CAGCTCGAAGATACCAGAACTTTATCAGATTATAATATATCCAAAGAGGCGACGCTTCAT 156026 || || || ||| |||| ||||| ||||| || || ||||| | || |||||| Sbjct 4659 CAACTTGAGGATGGTCGAACATTATCTGATTACAACATTCAAAAAGAATCTACCCTTCAT 4600 Query 156027 TTAGT 156031 |||| Sbjct 4599 CTAGT 4595 Score = 86.0 bits (94), Expect = 9e-12 Identities = 130/185 (70%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 155847 ACTGGAAAAACTATTACATTAGAAGTCGAAGATTCTGATAATATTTTAAACGTGAAAAAT 155906 ||||||||||| || || |||| ||||| ||||| | || || || |||| | Sbjct 5055 ACTGGAAAAACCATCACTCTAGAGGTCGAGTCGTCTGACACCATCGACAATGTAAAAAGT 4996 Query 155907 AAAATACAAGATAAAGAAGGCATACCTCCAGAACAACAAAGATTGATTTATGCCGGTAAG 155966 ||||||||||| |||||||| || || || || ||||||||| | |||| ||| || || Sbjct 4995 AAAATACAAGACAAAGAAGGAATTCCACCCGATCAACAAAGACTAATTTTTGCTGGAAAA 4936 Query 155967 CAGCTCGAAGATACCAGAACTTTATCAGATTATAATATATCCAAAGAGGCGACGCTTCAT 156026 || || || || |||| | || || ||||| || ||||| |||| || || Sbjct 4935 CAACTTGAGGACGGTCGAACACTTTCTGACTATAACATCCAAAAAGAATCGACACTCCAC 4876 Query 156027 TTAGT 156031 || || Sbjct 4875 TTGGT 4871 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731815060358400