Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Erysiphe_20necator_20[genbank_20GCA_5F000798735.1_202014-12-08] 6,224 sequences; 50,658,153 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq1089 178 3e-39 seq2354 111 3e-19 >seq1089 Length=20904 Score = 178 bits (196), Expect = 3e-39 Identities = 163/206 (79%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 |||||||| | |||||| | |||| ||| | |||| ||||| || || |||||| Sbjct 4574 ATACCACCACGAAGACGGAGAACTAGATGAAGGGTAGATTCTTTTTGAATGTTGTAATCA 4633 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 ||||||||||| |||| || | |||||| ||||||||||||||||| |||||||| ||| Sbjct 4634 GATAATGTTCGACCATCCTCAAGTTGTTTGCCAGCAAAGATTAATCTTTGTTGATCGGGT 4693 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || |||||||| || || ||||||||| |||| |||||| || | || || || ||| Sbjct 4694 GGAATTCCTTCCTTGTCCTGTATTTTACTTTTCACATTATCAATGGTGTCGGATGACTCT 4753 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGT 192512 || || || ||||||||||||||||| Sbjct 4754 ACCTCAAGGGTAATGGTTTTACCAGT 4779 Score = 167 bits (184), Expect = 5e-36 Identities = 176/229 (77%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGA 192368 |||||| | |||||| | ||||| || | ||| | || || || || ||||| | Sbjct 4063 ACCACCGCGAAGACGAAGCACTAAGTGGAGAGTCGATTCCTTTTGTATGTTGTAATC-GT 4121 Query 192369 TAAT-GTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTG 192427 ||| || ||| |||| || | ||| || ||||||||||| ||||| ||||| || |||| Sbjct 4122 TAAGAGTACGTCCATCTTCAAGTTGCTTTCCAGCAAAGATCAATCTTTGTTGGTCCGGTG 4181 Query 192428 GTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTA 192487 | || |||||||||||||| || ||| |||| || || ||| | |||||| ||||||| Sbjct 4182 GAATACCTTCTTTATCTTGGATCTTACTTTTGACGTTGTCTATTGTATCTGAAGATTCTA 4241 Query 192488 CTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 |||| ||||| || ||||| ||||| |||||||| | |||||||||||| Sbjct 4242 CTTCAAGAGTTATTGTTTTCCCAGTCAATGTTTTGACAAATATCTGCAT 4290 Score = 156 bits (172), Expect = 8e-33 Identities = 158/206 (77%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || ||||| | |||||| | || || || | || | ||||| ||| ||||| ||| Sbjct 4850 ATGCCACCACGAAGACGAAGGACCAAGTGGAGTGTCGATTCTTTTTGGATGTTATAGTCA 4909 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | |||||| | || || | |||||| |||||||| |||| ||| |||||||| ||| Sbjct 4910 GAAAGTGTTCGACCGTCCTCAAGTTGTTTTCCAGCAAAAATTAGTCTTTGTTGATCGGGT 4969 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || ||||||||||| |||||||||||| |||||||||| || | || ||||| || Sbjct 4970 GGAATTCCTTCTTTGTCTTGTATTTTACTTTTTACATTGTCGATGGTGTCAGACGACTCG 5029 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGT 192512 || |||||||| |||||||| ||||| Sbjct 5030 ACCTCTAGAGTGATGGTTTTTCCAGT 5055 Score = 147 bits (162), Expect = 4e-30 Identities = 161/214 (75%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || || ||||| ||||| | |||||||| | ||| | ||||| ||| || || || Sbjct 4289 ATGCCTCCTCTTAGACGAAGCACTAAATGAAGAGTGGATTCTTTCTGGATGTTGTAGTCT 4348 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 ||||| ||||| |||| || | |||||| || ||||| ||||||| |||||| || || Sbjct 4349 GATAAAGTTCGGCCATCCTCAAGTTGTTTTCCTGCAAATATTAATCGCTGTTGGTCCGGA 4408 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || ||||||||||||||||| ||||| |||| || ||| || | || || || || Sbjct 4409 GGAATTCCTTCTTTATCTTGAATTTTGCTTTTGACGTTATCAATGGTGTCAGAAGACTCG 4468 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTT 192520 ||||| |||||||| |||||||| || | | ||| Sbjct 4469 ACTTCGAGAGTAATAGTTTTACCGGTAACTATTT 4502 Score = 132 bits (146), Expect = 9e-26 Identities = 153/206 (74%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || ||||| | | ||||| ||||| || | ||| | ||||| ||||| || || Sbjct 5128 ATTCCACCGCGTAAACGTAGGACTAAGTGAAGAGTGGATTCTTTTTGTATATTGTAGTCG 5187 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | |||||| |||| ||||| || || ||||| || || ||||||||||| || ||| Sbjct 5188 GAAAGTGTTCGGCCATCCTCCAACTGCTTTCCAGCGAAAATCAATCTCTGTTGGTCTGGT 5247 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || |||||||| || || ||||| |||||||||| |||| ||| || ||||| Sbjct 5248 GGGATGCCTTCTTTGTCCTGAATTTTGCTTTTTACATTGTCGATAGTATCAGATGATTCG 5307 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGT 192512 ||||| || || || ||||| ||||| Sbjct 5308 ACTTCAAGGGTTATAGTTTTGCCAGT 5333 >seq2354 Length=38096 Score = 111 bits (122), Expect = 3e-19 Identities = 126/168 (75%), Gaps = 1/168 (1%) Strand=Plus/Minus Query 192347 CTTTAGAGATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGA 192406 |||| || ||||| |||||||| | |||||| |||| || | |||||||||||||| | Sbjct 4353 CTTTTGA-ATATTGTAATCAGAAAGAGTTCGTCCATCTTCAAGCTGTTTACCAGCAAATA 4295 Query 192407 TTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAG 192466 | || | ||||||||||| || ||||| |||||||| || || || ||| |||||| Sbjct 4294 TCAAACGTTGTTGATCAGGGGGGATTCCCTCTTTATCCTGGATCTTTGCTTTCACATTAT 4235 Query 192467 TTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTA 192514 || | || || || || || |||| || || ||||| ||||||| Sbjct 4234 CAATTGTGTCAGAGGACTCAACCTCTAAGGTGATAGTTTTGCCAGTTA 4187 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984401492642400