Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Erysiphe_20necator_20[genbank_20GCA_5F000798735.1_202014-12-08] 6,224 sequences; 50,658,153 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq3947 147 2e-30 seq1127 138 9e-28 >seq3947 Length=15482 Score = 147 bits (162), Expect = 2e-30 Identities = 588/912 (64%), Gaps = 89/912 (10%) Strand=Plus/Plus Query 43730 ATATGGCAAATGTACAAAAAAGCACAGGCGTCATTTTGGACAGCAGAAGAAGTTGATTTG 43789 |||||||| |||||||||||||| |||| || |||||||| || || || |||||||| Sbjct 8352 ATATGGCATATGTACAAAAAAGCCGAGGCATCTTTTTGGACTGCTGAGGAGATTGATTTG 8411 Query 43790 ACTAAAGACTTAGCAC-ATTGGATTG--CATTAAAACCACAA-GAAAAACATTTTATATC 43845 ||||||| | ||| |||||| | | | || | | ||| | | |||||||| Sbjct 8412 TCTAAAGATATT-CACGATTGGAATAACCGTCTCAATGATGATGAACGATACTTTATATC 8470 Query 43846 TTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAATTTGGTTAGTCG 43905 | || | || |||||||| || |||||||| || |||||||| | || || Sbjct 8471 TCATGTGCTAGCCTTTTTTGCCGCCTCAGACGGGATTGTTAATGAAAACCTCGTCGAGCG 8530 Query 43906 GTTTGCGCAA-GAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCA 43964 |||| ||| ||||| || | || || || ||| |||||||| ||||||||| | Sbjct 8531 GTTTA-GCAGTGAAGTGCAGATTCCTGAGGCTAGATTCTTTTATGGATTTCAAATTATGA 8589 Query 43965 TAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGATGG-G 44023 | |||||||| || || |||| || ||| | || ||||| ||||| |||||| | Sbjct 8590 TGGAAAATATCCACTCTGAAACTTATTCGCTTTTAATCGATACTTACATAAAAGATCAAG 8649 Query 44024 CACGAGAAGC----------------ATCGA---------TTG----TT-------TAAT 44047 | | | || | ||||| || || || Sbjct 8650 CTCAAAAAACTTATCTTTTCAATGCTATCGAGACAAGTAATTCCCATTTCCCACACTATC 8709 Query 44048 GCGATAGA----AAC-------AGTACCTGCGATTAAACATAAAGCAGACTGGGCCCTTA 44096 |||||| ||| ||||||| ||||| | || | ||||||||| | Sbjct 8710 GCGATAATCGTTAACGATTCATAGTACCTTGTATTAAGAAAAAGTCTGACTGGGCCGTCC 8769 Query 44097 AATGGATA-AATTCAAATGATTCT---TTTGGAGAACGACTTGTCGCGTTTGCAGTTGTG 44152 ||||| || |||| || || |||||| |||| ||||| || ||||| | ||| Sbjct 8770 GTTGGATTCAAGACAAA-GAGTCGACATTTGGACAACGTCTTGTAGCTTTTGCTGCAGTG 8828 Query 44153 GAAGGCATTTTCTTTTCAG--GATCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTT 44210 || || || || |||||| | || ||||| |||| |||||||| ||||||||||| | Sbjct 8829 GAGGGAATATT--TTTCAGTGGTTCCTTTGCTTCCATTTTTTGGTTGAAGAAACGAGGGT 8886 Query 44211 TGATGCCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGATGAAGGCTTACATTGCG 44270 ||||| |||| | || ||||| || || | || ||||| |||||| |||| | Sbjct 8887 TGATGGCTGGCCTAACCTTTTCTAACGAACTTATTTCACGTGACGAAGGCCTACACACGG 8946 Query 44271 ATTTTGCTTGCTTGTTACTTGGATATCTAGGAGACGATAAGCCTTCATGTAAGACAAT-- 44328 | |||||||| | | || | || | || | || | ||| |||| || | Sbjct 8947 ACTTTGCTTGTCTCCTCTTTTCACATTT----GAAGCACAGAC--CATCTAAG-CAGTCT 8999 Query 44329 -TACA-GATATTGTTGTAGAGGCAGTAAAGATAGAACAAGAATTTATGACAACAGCATTA 44386 | || ||| || | | | || || ||||||||||||||||| | || ||| | Sbjct 9000 GTTCAGGATGTTATCACACAAGCCGTCGAGATAGAACAAGAATTTCTAACTGAAGCGCTG 9059 Query 44387 CCTGTAAATTTAATAGGAATGAATGAACTTTTGATGAACCAATATATTGAATACATTGCA 44446 || | || | || ||||| | | ||||||| || || || |||| | ||||| Sbjct 9060 CCATGCGCTCTACTCGGCATGAACGCCACTCTGATGAAGCAGTACATCGAATTCGTTGCA 9119 Query 44447 GATCGTTTACT-------TTTGGAACTGGGTTGCGATAAACACTATATTGTACAAAACCC 44499 ||||| | || || |||| || | ||| || | || |||| || Sbjct 9120 GATCGACTTCTCCTCTCGTTAGGAA----ATTCC---AAAGTATACAAAGTCAAAAATCC 9172 Query 44500 GTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTTGAAAAACGCGT 44559 |||||||| ||||||||||| || |||| || || || |||||||| |||||||| || Sbjct 9173 ATTTGATTTCATGGAAAATATCTCTTTGGCTGGGAAGACTAACTTTTTCGAAAAACGAGT 9232 Query 44560 TGGAGAATATCA 44571 || || ||||| Sbjct 9233 AGGTGACTATCA 9244 >seq1127 Length=24995 Score = 138 bits (152), Expect = 9e-28 Identities = 288/426 (68%), Gaps = 11/426 (3%) Strand=Plus/Plus Query 19441 AATGGTCCTGAAATCTTAAATAAATATGTAGGTCAATCGGAAGAAAATGTACGACGTTTG 19500 || |||||||| | |||||||||||||| || ||||| |||||||| | || || Sbjct 16456 AACGGTCCTGAGGTATTAAATAAATATGTTGGCCAATCAGAAGAAAACATTCGCAAGCTG 16515 Query 19501 TTTGCTGACGCTGAAGAAGAACAAAAACGTTTAGGGCG-CAAAAGTTCTTTGCACATTAT 19559 || || || |||||| ||| | | || | |||| | ||||| | || ||||| Sbjct 16516 TTCGCAGATGCTGAAAAAG-AGTATAAGGAGAAGGGTGATGAAAGTGGCCTTCATATTAT 16574 Query 19560 AATACTAGATGAATTGGACGCAATCTGTAAGCAAAGAGGT------TCTGGT---GTAAA 19610 || | |||||||| || ||| | ||||| ||||||||| ||||| | | Sbjct 16575 TATTTTTGATGAATTAGATGCAGTGTGTAAACAAAGAGGTAGCGGGGCTGGTGGCGGTAC 16634 Query 19611 TGGAGTACATGACACTGTTGTCAATCAACTCCTGTCAAAATTAGACGGTGTTAACCAACT 19670 ||| || ||||| |||||| |||||| | || || ||| | || || || ||||||| Sbjct 16635 TGGTGTTGGTGACAGTGTTGTAAATCAATTACTCTCTAAACTTGATGGCGTGGACCAACT 16694 Query 19671 GAATAATATTTTAGTTATTGGCATGACTAATAGACTGGAATTAATAGACAGCGCCTTATT 19730 || |||||||| ||||||| |||||||| | || | || || || | | Sbjct 16695 TAACAATATTTTGCTTATTGGAATGACTAACCGTAAAGATATGATCGATGATGCTCTGCT 16754 Query 19731 ACGACCCGGTCGGTTGGAAATAAAGATCGAAATTAACTTACCCGATGAATGTGGACGTGT 19790 ||||| ||||| |||||| | | || |||||| | | || |||||| ||| || | Sbjct 16755 GCGACCAGGTCGCTTGGAAGTGCATATGGAAATTTCCCTTCCTGATGAACATGGCCGAGC 16814 Query 19791 GGAAATTTTAAACATACATACATCAACCATGCGACAAAATAACCTTTTAAATGACGATGT 19850 | ||| | || || || ||||||| |||||| | || || || | || ||||| Sbjct 16815 ACAGATTCTTAAGATTCACACATCAAAAATGCGAGATAACAATGTTATGGATACAGATGT 16874 Query 19851 AGATCT 19856 | |||| Sbjct 16875 AAATCT 16880 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397425850975120