Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Erysiphe_20necator_20[genbank_20GCA_5F000798735.1_202014-12-08] 6,224 sequences; 50,658,153 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq125 170 2e-37 seq504 87.8 2e-12 >seq125 Length=45052 Score = 170 bits (188), Expect = 2e-37 Identities = 551/843 (65%), Gaps = 33/843 (4%) Strand=Plus/Minus Query 110968 TGCGTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTTCATCTGAATCAAA 111027 ||| ||||| |||||||||||||| | || | | || || || || || || Sbjct 28144 TGCATGATATATGGTTTCAAAGATCTGTTTGTTGAGATGTTTTGCCTCTGGAGAGTCGAA 28085 Query 111028 TGCGTAGCGGCACAAA---ATAAATACATCCGCGAGACCTTGAACACCCAAACCAATAGG 111084 || |||| |||| | ||| ||||| || || |||||||| |||| | | || || Sbjct 28084 TGGCAAGCG---CAAAGCCAAAAACACATCTGCTAGCCCTTGAACTCCCACAGCTATTGG 28028 Query 111085 TCTGTGTCGCATATTAGACTTTCGCGCAGTCTCA---ACGGGATAAAAATTTCTGTCAAT 111141 || ||| || | ||| ||| || || ||| || ||||| |||| ||||| Sbjct 28027 TCGGTGGCGTAAATTGCTCTTACGAGCT---TCAGGCACAGGATAGTAATTAACATCAAT 27971 Query 111142 GACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCATGAAGTTTTTCATAATCAAA 111201 || | || ||||| | |||| || || ||||||||||| | | ||||||| Sbjct 27970 GATTTTATTCAGATTCCTAACTACAACCTGACAGACATCATGAAGTTTGTGAAAATCAAA 27911 Query 111202 AGTGCGAGTCTCTTCATTGACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGC 111261 ||| | || ||| ||||| | || | || | ||||||||||| |||||||| Sbjct 27910 AGTATTATCAGCTGTATTAACATAGGTCGGCAAAGCTAGGGATGCCAAATTACAAACAGC 27851 Query 111262 CGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACATAAGTTGGAACTCTTAATCGT 111321 | |||||| | || ||| || | |||||| ||||| | || || || || || Sbjct 27850 CACTTCATCCGGAGATGAGTATTCAACAATTTCGGTACAAAGATTAGAGCTACGGATAGT 27791 Query 111322 CCCCAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGT 111381 ||| | ||| ||||| || ||||| || || || ||||| ||||||||||| | || || Sbjct 27790 CCCGAGATTTTTTTGATTGCTCTTTTTATTACATGCATCTTTGTAGAGCATAAAAGGGGT 27731 Query 111382 CCCCGTCTCCGTCTGTGATTTGAGAATAGCCTTCCA-AACATCGGCGGCTGGTACAATGG 111440 || || || || |||| || || || | | ||| | | | | || | ||| | Sbjct 27730 ACCAGTTTCTGTTTGTGCTTCGATTATTGAGTACCATAGCTTTTG----TGCCATAATAG 27675 Query 111441 --CGTTGGCCCGTCCC-TCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCA 111497 | |||| |||| || || |||||| || | || ||||| || || || Sbjct 27674 TTCTACGGCCTTTCCCTTCTTGTTCATACTTTTCATATAAAGCCTCAAATTCATCGCCAT 27615 Query 111498 CCGCGTCGGAGAGACCTGGTGCCTTGTC-TGGACAGAAAAGAGACCATTGACCACCTTCC 111556 | | || | ||||| || | || | || || | |||| ||||| |||| || Sbjct 27614 ACACATCAGCTAGACCAGG-ACATTCACAAGGGCACATCAGAGTCCATTCACCATTTTTT 27556 Query 111557 TCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAGAGATCTC-TACACCG 111615 ||||| | |||||| || || || || ||||| |||| | || ||||| | | || || Sbjct 27555 TCAACTCTCTTCATAAAGAGATCAGGTATCCAAAGGGCATAGAATAGATCACGTGCA-CG 27497 Query 111616 AGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCCATGATATCCGCGTGCCA 111675 | | ||||| | || || || || | || |||||||| | ||||| |||||||| Sbjct 27496 AACTTCTTCTTTGCCGTGATTTTTGCGGAGGTCGAGGAACTCAAATATATCGGCGTGCCA 27437 Query 111676 TGGCTCAAGATAGACTGCGATAGATCCCTTTCGACGC------CCAGCTTGATTTACATA 111729 |||||| | ||| | |||| | |||| ||||| ||| |||||| ||||| Sbjct 27436 TGGCTCCAAATATATAGCGAATGCTCCC---GGACGCTTATTACCACCTTGATCAACATA 27380 Query 111730 GCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGATTGACCATTTGT 111789 | || || || || || || ||||| || | |||||||| ||| | |||||||| Sbjct 27379 TCTGGCAGTATTATTGAAGACTCGGAGCATCGGTACAATACCATTTGAGTTTCCATTTGT 27320 Query 111790 CCC 111792 || Sbjct 27319 TCC 27317 >seq504 Length=20096 Score = 87.8 bits (96), Expect = 2e-12 Identities = 273/418 (65%), Gaps = 26/418 (6%) Strand=Plus/Minus Query 11452 ATCAAAACGACCCGGGCGAAGGAGGGCGTCATCAAGGATATCCACGCGATTAGTGGCCGC 11511 |||||| ||||| || || | | || | |||||| | ||| | ||||||| | || Sbjct 11969 ATCAAATCGACCGGGACGCATTAAAGCTTTATCAAGTACATCTGGTCTATTAGTGCCTGC 11910 Query 11512 AATAACCACAA--TGC-CAGTCTCATTGTCAAAGCCATCCATCTCGGTGAGTAATTGATT 11568 | ||| |||| ||| ||| |||| || |||||||| || || | || ||||| Sbjct 11909 GAGAACAACAACTTGCTCAGAGGTATTG---AATCCATCCATTTCAGTTAATATCTGATT 11853 Query 11569 AATTGTTTGTTCTCTCTCATCATTTGCTGGCATACCACCAG----CACTGCGTTGC---- 11620 | || ||||| ||||||||| | ||||||| | | | |||| Sbjct 11852 TAAGGTAGCCTCTCTTTCATCATTTCC------ACCACCAAATGACCCAACCTTGCCGCG 11799 Query 11621 ----TTGCCCACCGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGC 11676 ||||| | ||||| || ||||| || || | |||||||||| |||| || || Sbjct 11798 AGATTTGCCAATGGCATCGATTTCATCTATAAAAATAATACATGGTGTGTTTTTACGAGC 11739 Query 11677 GATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGTT 11736 | | || ||||||||||| | | |||||| || |||||||||||||| ||||| | Sbjct 11738 TTCTGCGAAAAGATCGCGAACTCGTGAGGCACCGACGCCAACAAACATCTCTACAAATTC 11679 Query 11737 TGCGGCA-GAGCACTGGATGAATGGGACATTTGATTCACCCGCGATGGCTCGGGCGAGGA 11795 | || |||| || |||||| || | ||| || || || | ||| || | | Sbjct 11678 AGATCCACTTACACT-GAAGAATGGTACTTGTGACTCGCCTGCCGTAGCTTTAGCTAAAA 11620 Query 11796 GGGTCTTTCCCGTACCTGGCTTACCCGCGAGAAGGGCGCCTCGGGGGATCTTGGCACC 11853 | || || || || ||||| || | |||| || || || || || |||||||| Sbjct 11619 GTGTTTTCCCAGTTCCTGGTGGTCCGGAAAGAATAGCACCACGTGGTATTTTGGCACC 11562 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627983139110400