Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Erysiphe_20necator_20[genbank_20GCA_5F000798735.1_202014-12-08] 6,224 sequences; 50,658,153 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq359 188 1e-42 seq1089 150 4e-31 seq2354 125 1e-23 >seq359 Length=25150 Score = 188 bits (208), Expect = 1e-42 Identities = 178/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 || ||||| || |||||||| ||||| | || ||||||||||||||||||||||| Sbjct 13574 CCTCCACGAAGACGAAGTACGAGATGAAGAGTAGATTCTTTTTGGATGTTGTAGTCAGAC 13633 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 | || ||||| ||||| |||||||| || ||||| |||||||||||||||||| ||| Sbjct 13634 AATGTCCGGCCGTCCTCGAGTTGTTTTCCCGCAAAAATCAAACGTTGTTGGTCAGGTGGA 13693 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || || ||||| |||||||| |||| |||||| | ||||| |||||||| | || || Sbjct 13694 ATGCCTTCCTTATCTTGGATTTTTGATTTTACATTGTCGATGGTGTCCGATGACTCCACC 13753 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || || || || || |||||||| | || || ||||| || ||||| Sbjct 13754 TCAAGCGTAATAGTTTTACCCGTGAGGGTTTTCACGAAAATTTGCAT 13800 >seq1089 Length=20904 Score = 150 bits (166), Expect = 4e-31 Identities = 170/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||||| || || ||||| || | || | || ||| ||||| |||||||| || Sbjct 4063 ACCACCGCGAAGACGAAGCACTAAGTGGAGAGTCGATTCCTTTTGTATGTTGTAATCGTT 4122 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||| || || ||||| || ||||| || || ||||||||||| | ||||||||| || Sbjct 4123 AAGAGTACGTCCATCTTCAAGTTGCTTTCCAGCAAAGATCAATCTTTGTTGGTCCGGTGG 4182 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 |||||| || || ||||||||||| ||| ||| | || || || || |||| ||| || Sbjct 4183 AATACCTTCTTTATCTTGGATCTTACTTTTGACGTTGTCTATTGTATCTGAAGATTCTAC 4242 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||| ||||| || || || || ||||| || || || ||||||||||| Sbjct 4243 TTCAAGAGTTATTGTTTTCCCAGTCAATGTTTTGACAAATATCTGCAT 4290 Score = 147 bits (162), Expect = 5e-30 Identities = 151/195 (77%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 282882 AGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGG 282941 || ||||| || | ||| | ||| |||||| |||||||||||||| | | || ||| Sbjct 4301 AGACGAAGCACTAAATGAAGAGTGGATTCTTTCTGGATGTTGTAGTCTGATAAAGTTCGG 4360 Query 282942 CCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCC 283001 |||||||| |||||||| || ||||| || || || |||||||| ||||| || || Sbjct 4361 CCATCCTCAAGTTGTTTTCCTGCAAATATTAATCGCTGTTGGTCCGGAGGAATTCCTTCT 4420 Query 283002 TTGTCTTGGATCTTTGCTTTT-ACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGT 283060 || ||||| || ||||||||| ||| |||| || ||||| |||| |||||||||||||| Sbjct 4421 TTATCTTGAAT-TTTGCTTTTGACGTTATCAATGGTGTCAGAAGACTCGACTTCGAGAGT 4479 Query 283061 GATCGTCTTACCCGT 283075 || || ||||| || Sbjct 4480 AATAGTTTTACCGGT 4494 Score = 132 bits (146), Expect = 1e-25 Identities = 151/203 (74%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 |||||||| || ||||| |||| || | || ||||||||||||||| ||||||| | Sbjct 4853 CCACCACGAAGACGAAGGACCAAGTGGAGTGTCGATTCTTTTTGGATGTTATAGTCAGAA 4912 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || || || || ||||| |||||||| || ||||| || | | |||||| || ||| Sbjct 4913 AGTGTTCGACCGTCCTCAAGTTGTTTTCCAGCAAAAATTAGTCTTTGTTGATCGGGTGGA 4972 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || || || |||||||| || || |||||| | ||||| ||||| || | ||||| Sbjct 4973 ATTCCTTCTTTGTCTTGTATTTTACTTTTTACATTGTCGATGGTGTCAGACGACTCGACC 5032 Query 283053 TCGAGAGTGATCGTCTTACCCGT 283075 || |||||||| || || || || Sbjct 5033 TCTAGAGTGATGGTTTTTCCAGT 5055 Score = 104 bits (114), Expect = 5e-17 Identities = 126/169 (75%), Gaps = 2/169 (1%) Strand=Plus/Plus Query 282908 TTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAA 282967 ||||||||| || |||||||| | ||| || ||||||||||| | || || || || || Sbjct 5166 TTCTTTTTGTATATTGTAGTCGGAAAGTGTTCGGCCATCCTCCAACTGCTTTCCAGCGAA 5225 Query 282968 GATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGC-TTTTACGG 283026 ||||| | |||||||| || || || || ||||| || || ||||| |||||| Sbjct 5226 AATCAATCTCTGTTGGTCTGGTGGGATGCCTTCTTTGTCCTGAAT-TTTGCTTTTTACAT 5284 Query 283027 TATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGT 283075 | |||||||| || || | ||||||||| || || || || || || || Sbjct 5285 TGTCGATAGTATCAGATGATTCGACTTCAAGGGTTATAGTTTTGCCAGT 5333 >seq2354 Length=38096 Score = 125 bits (138), Expect = 1e-23 Identities = 135/179 (75%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 282912 TTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATC 282971 ||||| || ||||| |||| ||| || || ||||| || || ||||| || ||||| ||| Sbjct 4352 TTTTGAATATTGTAATCAGAAAGAGTTCGTCCATCTTCAAGCTGTTTACCAGCAAATATC 4293 Query 282972 AAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCG 283031 ||||||||||| ||| || || ||||| || || |||||||||||||| || |||| Sbjct 4292 AAACGTTGTTGATCAGGGGGGATTCCCTCTTTATCCTGGATCTTTGCTTTCACATTATCA 4233 Query 283032 ATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAA 283090 || ||||| || | || || || | ||||| || || || || | ||||| ||||| Sbjct 4232 ATTGTGTCAGAGGACTCAACCTCTAAGGTGATAGTTTTGCCAGTTAGGGTCTTGACGAA 4174 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046655727782496