Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Erysiphe_20necator_20[genbank_20GCA_5F000798755.1_202014-12-08] 6,979 sequences; 49,465,130 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq3288 159 8e-34 seq3919 150 4e-31 seq1945 129 1e-24 seq2264 109 1e-18 >seq3288 Length=20993 Score = 159 bits (176), Expect = 8e-34 Identities = 166/215 (77%), Gaps = 2/215 (1%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || |||||||| | ||| |||| ||| | || ||||||||||| || || ||||| Sbjct 16516 ATGCCTCCTCTTAGACGAAGCACTAAATGAAGAGTGGATTCTTTCTGGATGTTGTAGTCT 16457 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 |||| ||||| || || || ||||||||||| ||||| |||| | |||||| || ||| Sbjct 16456 GATAAAGTTCGGCCATCCTCAAGTTGTTTTCCTGCAAATATTAATCGCTGTTGGTCCGGA 16397 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTT-ACATTTTCTACGGTATCGCTAGGTTC 104508 || |||||||||||||| ||||| ||||||||| || || || | ||| || || || Sbjct 16396 GGAATTCCTTCTTTATCTTGAAT-TTTGCTTTTGACGTTATCAATGGTGTCAGAAGACTC 16338 Query 104509 TACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTT 104543 || || || |||||||| ||||| |||| | ||| Sbjct 16337 GACTTCGAGAGTAATAGTTTTACCGGTAACTATTT 16303 Score = 152 bits (168), Expect = 1e-31 Identities = 150/191 (79%), Gaps = 2/191 (1%) Strand=Plus/Minus Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407 || |||||||| | ||||||||||| ||||| || || ||||||| |||| ||| || Sbjct 16213 AGAACTAGATGAAGGGTAGATTCTTTTTGAATGTTGTAATCAGATAATGTTCGACCATCC 16154 Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467 || |||||||| |||||||| |||| || |||||||| || || |||||||| || ||| Sbjct 16153 TCAAGTTGTTTGCCAGCAAAGATTAATCTTTGTTGATCGGGTGGAATTCCTTCCTTGTCC 16094 Query 104468 TGAATCTTTGCTTTT-ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526 || || ||| ||||| ||||| || | ||| ||| | |||||||| || ||||| || Sbjct 16093 TGTAT-TTTACTTTTCACATTATCAATGGTGTCGGATGACTCTACCTCAAGGGTAATGGT 16035 Query 104527 CTTACCAGTAA 104537 |||||||||| Sbjct 16034 TTTACCAGTAA 16024 Score = 147 bits (162), Expect = 5e-30 Identities = 137/174 (79%), Gaps = 0/174 (0%) Strand=Plus/Minus Query 104362 TGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCC 104421 ||| |||||||| || || ||||||||||| || |||| |||||| || ||||||||||| Sbjct 15923 TGTCGATTCTTTTTGGATGTTATAGTCAGAAAGTGTTCGACCGTCCTCAAGTTGTTTTCC 15864 Query 104422 AGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTT 104481 |||||||||||| || |||||||| || || ||||||||||| || || || || ||| Sbjct 15863 AGCAAAAATTAGTCTTTGTTGATCGGGTGGAATTCCTTCTTTGTCTTGTATTTTACTTTT 15804 Query 104482 TACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGT 104535 |||||| || | ||| || | || |||||||| || || || || ||||| Sbjct 15803 TACATTGTCGATGGTGTCAGACGACTCGACCTCTAGAGTGATGGTTTTTCCAGT 15750 Score = 127 bits (140), Expect = 5e-24 Identities = 156/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 ||| |||| || | || ||||| || || || || || || ||||| | || || Sbjct 16727 AAGCACTAAGTGGAGAGTCGATTCCTTTTGTATGTTGTAATCGTTAAGAGTACGTCCATC 16668 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 ||| ||||| ||||||||||| || | || ||||| || || || || ||||||||||| Sbjct 16667 TTCAAGTTGCTTTCCAGCAAAGATCAATCTTTGTTGGTCCGGTGGAATACCTTCTTTATC 16608 Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526 || ||||| ||| || || |||| ||||| || |||||| || || || || || Sbjct 16607 TTGGATCTTACTTTTGACGTTGTCTATTGTATCTGAAGATTCTACTTCAAGAGTTATTGT 16548 Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || ||||| | |||||| |||||||||||||| Sbjct 16547 TTTCCCAGTCAATGTTTTGACAAATATCTGCAT 16515 >seq3919 Length=22905 Score = 150 bits (166), Expect = 4e-31 Identities = 175/236 (74%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 104324 TTATTTATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTA 104383 || ||| ||| || | || | |||||| ||||| | ||||||||||| || || || Sbjct 11312 TTCTTTGCTCCTCCACGAAGACGAAGTACGAGATGAAGAGTAGATTCTTTTTGGATGTTG 11253 Query 104384 TAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGA 104443 |||||||| | || | ||||| || ||||||||||| |||||||| | | ||||| Sbjct 11252 TAGTCAGACAATGTCCGGCCGTCCTCGAGTTGTTTTCCCGCAAAAATCAAACGTTGTTGG 11193 Query 104444 TCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTA 104503 ||||| || || ||||| ||||| || || |||| ||||||||| || | ||| || Sbjct 11192 TCAGGTGGAATGCCTTCCTTATCTTGGATTTTTGATTTTACATTGTCGATGGTGTCCGAT 11133 Query 104504 GGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 | || ||||| || |||||||| ||||| || || ||||| || || || ||||| Sbjct 11132 GACTCCACCTCAAGCGTAATAGTTTTACCCGTGAGGGTTTTCACGAAAATTTGCAT 11077 >seq1945 Length=7355 Score = 129 bits (142), Expect = 1e-24 Identities = 136/179 (76%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 104372 TTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATT 104431 || |||||||| || ||||| ||||||| || ||||| || ||||| |||||||| || Sbjct 3117 TTTTGAATATTGTAATCAGAAAGAGTTCGTCCATCTTCAAGCTGTTTACCAGCAAATATC 3176 Query 104432 AGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCT 104491 | | ||||||||||| || ||||| ||||||||||| ||||||||||| ||||| || Sbjct 3177 AAACGTTGTTGATCAGGGGGGATTCCCTCTTTATCCTGGATCTTTGCTTTCACATTATCA 3236 Query 104492 ACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAA 104550 | || || | || ||||||| || ||||| || ||||| || || || || || Sbjct 3237 ATTGTGTCAGAGGACTCAACCTCTAAGGTGATAGTTTTGCCAGTTAGGGTCTTGACGAA 3295 >seq2264 Length=21137 Score = 109 bits (120), Expect = 1e-18 Identities = 201/294 (68%), Gaps = 3/294 (1%) Strand=Plus/Plus Query 268733 ATATGGAGGATGTACAAACAGGCCGTTGCTTCTTTTTGGACTGTAGAAGAAGTAGATCTG 268792 |||||| ||||||||| | |||| || ||||||||||||| || || | ||| || Sbjct 7809 ATATGGCATATGTACAAAAAAGCCGAGGCATCTTTTTGGACTGCTGAGGAGATTGATTTG 7868 Query 268793 TCTTATGACTTAATAGATTGGAAAAA---TTTAAAACCAGAAGAAAGAAGATTTATATCT 268849 ||| | || | |||||||| || | | || || ||| || ||||||||| Sbjct 7869 TCTAAAGATATCCACGATTGGAATAACCGTCTCAATGATGATGAACGATACTTTATATCT 7928 Query 268850 TATATTCTTGCGTTTTTTGCAGTTAGTGATGGTATCGTTAACGAAAATCTAGTAGAGAAG 268909 || | || || |||||||| | || || || ||||| ||||| || || ||| | Sbjct 7929 CATGTGCTAGCCTTTTTTGCCGCCTCAGACGGGATTGTTAATGAAAACCTCGTCGAGCGG 7988 Query 268910 TTCTGTCAAGAGGTACAGATTCCTGAAGCCAGATGTTTTTACGGATTCCAGATAGCTATA 268969 || | || || ||||||||||| || |||| ||||| ||||| || || || Sbjct 7989 TTTAGCAGTGAAGTGCAGATTCCTGAGGCTAGATTCTTTTATGGATTTCAAATTATGATG 8048 Query 268970 GAAAATATTCATTCAGAGATGTACAGTCTATTAATAGATACTTATATAGATGAT 269023 |||||||| || || || | || || ||||| |||||||| ||| | ||| Sbjct 8049 GAAAATATCCACTCTGAAACTTATTCGCTTTTAATCGATACTTACATAAAAGAT 8102 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151295443754132