Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Erysiphe_20necator_20[genbank_20GCA_5F000798755.1_202014-12-08] 6,979 sequences; 49,465,130 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq3288 98.7 9e-16 >seq3288 Length=20993 Score = 98.7 bits (108), Expect = 9e-16 Identities = 135/186 (73%), Gaps = 2/186 (1%) Strand=Plus/Plus Query 24015 ACTGGAAAATCGATTACCATCGAAGTCGAGGCCAACGACACCATCGAGCAAGTCAAACAA 24074 ||||| ||| | |||||| | || || ||| | ||||||||| || | || ||| Sbjct 16026 ACTGGTAAAACCATTACCCTTGAGGTAGAGTCATCCGACACCATTGATAATGTGAAAAGT 16085 Query 24075 AAGATTACCGACAAAGAAGGCATACCTCCCGATCAACAGAGACTGATTTACGGCGGCAAG 24134 || || ||||| ||||| || || ||||||||||| ||| | || | | ||||| Sbjct 16086 AAAATACAGGACAAGGAAGGAATTCCACCCGATCAACAAAGATTAATCTTTGCTGGCAAA 16145 Query 24135 CAACTCGAAGATGACAGAAACGTCAGC-GATTATAACATTCAAAAAGAATCTACAATTCA 24193 ||||| || |||| | ||| | | | ||||| |||||||||||||||||||| |||| Sbjct 16146 CAACTTGAGGATGGTCG-AACATTATCTGATTACAACATTCAAAAAGAATCTACCCTTCA 16204 Query 24194 TTTAGT 24199 | |||| Sbjct 16205 TCTAGT 16210 Score = 96.9 bits (106), Expect = 3e-15 Identities = 150/212 (71%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 24007 AAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAACGACACCATCGAGCAAG 24066 ||| | | || || ||| | ||||| ||||||||||| | |||||||| || | | Sbjct 16303 AAATAGTTACCGGTAAAACTATTACTCTCGAAGTCGAGTCTTCTGACACCATTGATAACG 16362 Query 24067 TCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAACAGAGACTGATTTACG 24126 ||||| || ||| || |||||||| || ||||| || |||||| || | || | | Sbjct 16363 TCAAAAGCAAAATTCAAGATAAAGAAGGAATTCCTCCGGACCAACAGCGATTAATATTTG 16422 Query 24127 GCGGCAAGCAACTCGAAGATGACAGAAACGTCAGC-GATTATAACATTCAAAAAGAATCT 24185 || || ||||| || |||| | | ||| | | | || || ||||| || |||||||| Sbjct 16423 CAGGAAAACAACTTGAGGATGGCCG-AACTTTATCAGACTACAACATCCAGAAAGAATCC 16481 Query 24186 ACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 || ||||||||||| | | | |||||||| Sbjct 16482 ACTCTTCATTTAGTGCTTCGTCTAAGAGGAGG 16513 Score = 91.5 bits (100), Expect = 1e-13 Identities = 131/185 (71%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 24015 ACTGGAAAATCGATTACCATCGAAGTCGAGGCCAACGACACCATCGAGCAAGTCAAACAA 24074 ||||| ||| | || ||| | |||||||| | || || ||||| | || ||| Sbjct 15472 ACTGGCAAAACTATAACCCTTGAAGTCGAATCATCTGATACTATCGACAATGTAAAAAGC 15531 Query 24075 AAGATTACCGACAAAGAAGGCATACCTCCCGATCAACAGAGACTGATTTACGGCGGCAAG 24134 || ||| |||||||||||||| || || || ||||||||| |||||| || || ||| Sbjct 15532 AAAATTCAGGACAAAGAAGGCATCCCACCAGACCAACAGAGATTGATTTTCGCTGGAAAG 15591 Query 24135 CAACTCGAAGATGACAGAAACGTCAGCGATTATAACATTCAAAAAGAATCTACAATTCAT 24194 || | || |||| | ||| | ||| || || || ||||||||||| || |||| Sbjct 15592 CAGTTGGAGGATGGCCGAACACTTTCCGACTACAATATACAAAAAGAATCCACTCTTCAC 15651 Query 24195 TTAGT 24199 ||||| Sbjct 15652 TTAGT 15656 Score = 86.0 bits (94), Expect = 5e-12 Identities = 130/185 (70%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 24015 ACTGGAAAATCGATTACCATCGAAGTCGAGGCCAACGACACCATCGAGCAAGTCAAACAA 24074 ||||||||| | || || | || |||||| | ||||||||||| | || ||| Sbjct 15750 ACTGGAAAAACCATCACTCTAGAGGTCGAGTCGTCTGACACCATCGACAATGTAAAAAGT 15809 Query 24075 AAGATTACCGACAAAGAAGGCATACCTCCCGATCAACAGAGACTGATTTACGGCGGCAAG 24134 || || ||||||||||| || || ||||||||||| ||||| |||| | || || Sbjct 15810 AAAATACAAGACAAAGAAGGAATTCCACCCGATCAACAAAGACTAATTTTTGCTGGAAAA 15869 Query 24135 CAACTCGAAGATGACAGAAACGTCAGCGATTATAACATTCAAAAAGAATCTACAATTCAT 24194 ||||| || || | ||| | || |||||||| ||||||||||| ||| | || Sbjct 15870 CAACTTGAGGACGGTCGAACACTTTCTGACTATAACATCCAAAAAGAATCGACACTCCAC 15929 Query 24195 TTAGT 24199 || || Sbjct 15930 TTGGT 15934 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429899431121745