Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Erysiphe_20necator_20[genbank_20GCA_5F000798755.1_202014-12-08] 6,979 sequences; 49,465,130 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq3288 96.9 3e-15 >seq3288 Length=20993 Score = 96.9 bits (106), Expect = 3e-15 Identities = 142/195 (73%), Gaps = 6/195 (3%) Strand=Plus/Minus Query 131019 ACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATC-GCTCATGGTGCGCG 131077 ||| ||||||||||| | || || || || || |||||||| || | | | | | || Sbjct 16502 ACGAAGCACTAAATGAAGAGTGGATTCTTTCTGGATGTTGTAGTCTGATAAAGTTCGGCC 16443 Query 131078 AGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTT 131137 | ||||| || || || ||||| | ||||| ||||| ||||||||||| |||||||||| Sbjct 16442 A-TCCTCAAGTTGTTTTCCTGCAAATATTAATCGCTGTTGGTCCGGAGGAATTCCTTCTT 16384 Query 131138 TGTCGGTGATTTTCTGCTT--GAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGT 131195 | || ||| ||| ||||| || | || | || || | ||||||| |||| || Sbjct 16383 TATCT-TGAATTT-TGCTTTTGACGTTATCAATGGTGTCAGAAGACTCGACTTCGAGAGT 16326 Query 131196 AACGGTTTTACCGGT 131210 || ||||||||||| Sbjct 16325 AATAGTTTTACCGGT 16311 Score = 96.9 bits (106), Expect = 3e-15 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 |||||||| | ||| |||||||| || | ||||| |||||||| |||||||||||| | Sbjct 16741 CCACCGCGAAGACGAAGCACTAAGTGGAGAGTCGATTCCTTTTGTATGTTGTAATCGTTA 16682 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || || || || ||||| || || |||| || | || |||||||| || Sbjct 16681 AGAGTACGTCCATCTTCAAGTTGCTTTCCAGCAAAGATCAATCTTTGTTGGTCCGGTGGA 16622 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || |||||||| || ||| || |||| | || | ||||| | || || | Sbjct 16621 ATACCTTCTTTATCTTGGATCTTACTTTTGACGTTGTCTATTGTATCTGAAGATTCTACT 16562 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATGACT 131238 || | || | ||||| || || | ||||| || || ||||||||| || Sbjct 16561 TCAAGAGTTATTGTTTTCCCAGTCAATGTTTTGACAAATATCTGCATGCCT 16511 Score = 86.0 bits (94), Expect = 6e-12 Identities = 143/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATC-GCT 131066 ||||| || | ||| || |||| ||| | ||| || || ||||||||||||||||| | | Sbjct 16228 CCACCACGAAGACGGAGAACTAGATGAAGGGTAGATTCTTTTTGAATGTTGTAATCAGAT 16169 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || || || ||||| || || ||||| || ||||||| | || || || || || Sbjct 16168 AAT-GTTCGACCATCCTCAAGTTGTTTGCCAGCAAAGATTAATCTTTGTTGATCGGGTGG 16110 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 |||||||| ||||| ||||| || | | || | || |||| ||||| | Sbjct 16109 AATTCCTTCCTTGTCCTGTATTTTACTTTTCACATTATCAATGGTGTCGGATGACTCTAC 16050 Query 131187 GTCGACGGTAACGGTTTTACCGGT 131210 || | ||||| ||||||||| || Sbjct 16049 CTCAAGGGTAATGGTTTTACCAGT 16026 Score = 82.4 bits (90), Expect = 7e-11 Identities = 109/149 (73%), Gaps = 2/149 (1%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 |||||||| ||||| || ||||| || | || || || ||||| || ||||| ||| Sbjct 15674 CCACCGCGTAAACGTAGGACTAAGTGAAGAGTGGATTCTTTTTGTATATTGTAGTCGGAA 15615 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || ||||| | |||||| || ||| | || || | ||| ||||| || ||| Sbjct 15614 AGTGTTCGGCCATCCTCCAACTGCTTTCCAGCGAAAATCAATCTCTGTTGGTCTGGTGGG 15555 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTT 131156 || ||||||||||| ||| ||| ||||| Sbjct 15554 ATGCCTTCTTTGTC-CTGAATTT-TGCTT 15528 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471971622783360