Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Erysiphe_20necator_20[genbank_20GCA_5F000798755.1_202014-12-08]
6,979 sequences; 49,465,130 total letters
Query= NC_008168.1
Length=104710
Score E
Sequences producing significant alignments: (Bits) Value
seq79 140 2e-28
seq3919 105 4e-18
seq1945 96.9 2e-15
seq3288 84.2 1e-11
>seq79
Length=7708
Score = 140 bits (154), Expect = 2e-28
Identities = 88/95 (93%), Gaps = 5/95 (5%)
Strand=Plus/Plus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 2117 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 2176
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
|||||| ||||||||||||||||||||||||||||
Sbjct 2177 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 2211
>seq3919
Length=22905
Score = 105 bits (116), Expect = 4e-18
Identities = 148/208 (71%), Gaps = 0/208 (0%)
Strand=Plus/Minus
Query 38114 ATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCTAATTG 38173
||||||||| || ||||| || ||||| |||||||| || |||| || | |||
Sbjct 11280 ATGAAGAGTAGATTCTTTTTGGATGTTGTAGTCAGACAATGTCCGGCCGTCCTCGAGTTG 11221
Query 38174 TTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTT 38233
|||||| ||||| || | |||||||| || | || | |||||| || || |||||
Sbjct 11220 TTTTCCCGCAAAAATCAAACGTTGTTGGTCAGGTGGAATGCCTTCCTTATCTTGGATTTT 11161
Query 38234 TTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGT 38293
| || ||||| | || || || || || || | |||||||||||||||||
Sbjct 11160 TGATTTTACATTGTCGATGGTGTCCGATGACTCCACCTCAAGCGTAATAGTTTTACCCGT 11101
Query 38294 CAAGGTTTTCACGAATATCTGCATGTTT 38321
| |||||||||||| || |||||| ||
Sbjct 11100 GAGGGTTTTCACGAAAATTTGCATGATT 11073
>seq1945
Length=7355
Score = 96.9 bits (106), Expect = 2e-15
Identities = 130/181 (72%), Gaps = 0/181 (0%)
Strand=Plus/Plus
Query 38128 CCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATA 38187
|||||||||||||||||||||| | | ||| | || || | ||||| || |||||||
Sbjct 3115 CCTTTTGAATATTGTAATCAGAAAGAGTTCGTCCATCTTCAAGCTGTTTACCAGCAAATA 3174
Query 38188 TTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCT 38247
| | ||||||||||| | ||||| || ||||| ||| || ||| |||||||| |
Sbjct 3175 TCAAACGTTGTTGATCAGGGGGGATTCCCTCTTTATCCTGGATCTTTGCTTTCACATTAT 3234
Query 38248 GGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGA 38307
| || || ||||| ||||| || |||||||| || || | ||| || ||||
Sbjct 3235 CAATTGTGTCAGAGGACTCAACCTCTAAGGTGATAGTTTTGCCAGTTAGGGTCTTGACGA 3294
Query 38308 A 38308
|
Sbjct 3295 A 3295
>seq3288
Length=20993
Score = 84.2 bits (92), Expect = 1e-11
Identities = 156/229 (68%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 38090 ACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGA 38149
|||||| | | ||| | ||| || || ||||| |||||||| || ||||||||
Sbjct 16742 ACCACCGCGAAGACGAAGCACTAAGTGGAGAGTCGATTCCTTTTGTATGTTGTAATCGTT 16683
Query 38150 CAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGG 38209
| | |||| | || || | ||| ||||| ||||| || | | |||||| || | ||
Sbjct 16682 AAGAGTACGTCCATCTTCAAGTTGCTTTCCAGCAAAGATCAATCTTTGTTGGTCCGGTGG 16623
Query 38210 GACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAAC 38269
| |||||||| || || || || || || | | |||||| | ||| ||
Sbjct 16622 AATACCTTCTTTATCTTGGATCTTACTTTTGACGTTGTCTATTGTATCTGAAGATTCTAC 16563
Query 38270 TTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318
||| | || || ||||| || ||||| ||||| || ||||||||||||
Sbjct 16562 TTCAAGAGTTATTGTTTTCCCAGTCAATGTTTTGACAAATATCTGCATG 16514
Score = 82.4 bits (90), Expect = 5e-11
Identities = 140/203 (69%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150
|| ||||| | ||| | ||| |||||||||||| || || || || ||||| || ||
Sbjct 16513 CCTCCTCTTAGACGAAGCACTAAATGAAGAGTGGATTCTTTCTGGATGTTGTAGTCTGAT 16454
Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210
||| || | || || | ||||||||| |||||||||| || ||||| || | ||
Sbjct 16453 AAAGTTCGGCCATCCTCAAGTTGTTTTCCTGCAAATATTAATCGCTGTTGGTCCGGAGGA 16394
Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270
| |||||||| || |||||| || || || | | || || | || |||
Sbjct 16393 ATTCCTTCTTTATCTTGAATTTTGCTTTTGACGTTATCAATGGTGTCAGAAGACTCGACT 16334
Query 38271 TCTAATGTAATAGTTTTACCCGT 38293
|| | |||||||||||||| ||
Sbjct 16333 TCGAGAGTAATAGTTTTACCGGT 16311
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 334918710542549
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |