Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Erysiphe_20necator_20[genbank_20GCA_5F000798755.1_202014-12-08] 6,979 sequences; 49,465,130 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq3919 123 6e-23 seq3288 122 2e-22 seq1945 107 5e-18 >seq3919 Length=22905 Score = 123 bits (136), Expect = 6e-23 Identities = 166/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 ||| || || || | |||||||||||||| || |||||||||||| || ||||| | Sbjct 11304 TCCTCCACGAAGACGAAGTACGAGATGAAGAGTAGATTCTTTTTGGATGTTGTAGTCAGA 11245 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 | || || ||||| || | ||||||||| || || |||| ||| ||||| | ||| Sbjct 11244 CAATGTCCGGCCGTCCTCGAGTTGTTTTCCCGCAAAAATCAAACGTTGTTGGTCAGGTGG 11185 Query 288366 GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTAC 288425 || ||||| ||||| |||||||| | ||| || || || || | || || || || Sbjct 11184 AATGCCTTCCTTATCTTGGATTTTTGATTTTACATTGTCGATGGTGTCCGATGACTCCAC 11125 Query 288426 TTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATTAT 288476 || ||||| || || || || || || || || ||||| || ||||| || Sbjct 11124 CTCAAGCGTAATAGTTTTACCCGTGAGGGTTTTCACGAAAATTTGCATGAT 11074 >seq3288 Length=20993 Score = 122 bits (134), Expect = 2e-22 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 288244 TGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCG 288303 || |||||||| || | ||| || | || | || ||| ||||| || || || ||| Sbjct 16744 TGACCACCGCGAAGACGAAGCACTAAGTGGAGAGTCGATTCCTTTTGTATGTTGTAATCG 16685 Query 288304 GCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT 288363 || || ||||| ||||| | ||| ||||| || ||||||| | ||||| | Sbjct 16684 TTAAGAGTACGTCCATCTTCAAGTTGCTTTCCAGCAAAGATCAATCTTTGTTGGTCCGGT 16625 Query 288364 GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 || || ||||||||||| ||||| || ||| ||||| ||||| | ||| |||||| Sbjct 16624 GGAATACCTTCTTTATCTTGGATCTTACTTTTGACGTTGTCTATTGTATCTGAAGATTCT 16565 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| || || || || ||||| |||| || ||||| ||||||||||| Sbjct 16564 ACTTCAAGAGTTATTGTTTTCCCAGTCAATGTTTTGACAAATATCTGCAT 16515 Score = 89.7 bits (98), Expect = 1e-12 Identities = 133/189 (70%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 288261 AAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTC 288320 ||| || | ||||| ||| |||||| ||||| || ||||| | | || || || || Sbjct 16499 AAGCACTAAATGAAGAGTGGATTCTTTCTGGATGTTGTAGTCTGATAAAGTTCGGCCATC 16440 Query 288321 TTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATC 288380 || | |||||||||||| || || | |||||||| || |||||||||||||| Sbjct 16439 CTCAAGTTGTTTTCCTGCAAATATTAATCGCTGTTGGTCCGGAGGAATTCCTTCTTTATC 16380 Query 288381 CTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGT 288440 || ||||| ||| ||||| || || | || || || |||||||| || || || Sbjct 16379 TTGAATTTTGCTTTTGACGTTATCAATGGTGTCAGAAGACTCGACTTCGAGAGTAATAGT 16320 Query 288441 CTTCCCGGT 288449 || ||||| Sbjct 16319 TTTACCGGT 16311 Score = 87.8 bits (96), Expect = 4e-12 Identities = 145/208 (70%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| ||||| || || | ||| || | || | || |||||||||||| ||||||| Sbjct 15956 CATG-CCACCACGAAGACGAAGGACCAAGTGGAGTGTCGATTCTTTTTGGATGTTATAGT 15898 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 | | || || || ||||| || | ||||||||| || || || || | |||||| Sbjct 15897 CAGAAAGTGTTCGACCGTCCTCAAGTTGTTTTCCAGCAAAAATTAGTCTTTGTTGATCGG 15838 Query 288362 CTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATT 288421 ||| ||||||||||| || || ||||| ||| || || || || | || ||| | Sbjct 15837 GTGGAATTCCTTCTTTGTCTTGTATTTTACTTTTTACATTGTCGATGGTGTCAGACGACT 15778 Query 288422 CTACTTCGAGCGTGATCGTCTTCCCGGT 288449 | || || || ||||| || || || || Sbjct 15777 CGACCTCTAGAGTGATGGTTTTTCCAGT 15750 >seq1945 Length=7355 Score = 107 bits (118), Expect = 5e-18 Identities = 131/179 (73%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 288286 TTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATC 288345 ||||| ||||| || || | || || ||||| ||||| | ||||| || || || ||| Sbjct 3117 TTTTGAATATTGTAATCAGAAAGAGTTCGTCCATCTTCAAGCTGTTTACCAGCAAATATC 3176 Query 288346 AGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCT 288405 | ||| |||||| | |||||||| |||||||||||||| || |||||||| || || Sbjct 3177 AAACGTTGTTGATCAGGGGGGATTCCCTCTTTATCCTGGATCTTTGCTTTCACATTATCA 3236 Query 288406 ATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAA 288464 || | || || || || || | ||||| || || || || || ||||||||||| Sbjct 3237 ATTGTGTCAGAGGACTCAACCTCTAAGGTGATAGTTTTGCCAGTTAGGGTCTTGACGAA 3295 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179548917146762