Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Erysiphe_20necator_20[genbank_20GCA_5F000798755.1_202014-12-08] 6,979 sequences; 49,465,130 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq1112 383 2e-101 seq2264 199 4e-46 >seq1112 Length=30899 Score = 383 bits (424), Expect = 2e-101 Identities = 665/963 (69%), Gaps = 14/963 (1%) Strand=Plus/Plus Query 47880 GCTATAGATGCTAGATTACATACAGCTACCTCATTTGGATTAGTATATTGTATTATTTCA 47939 |||| ||||| | |||||| ||||| || |||| ||| | |||| | ||||| Sbjct 17172 GCTAGGGATGCCAAATTACAAACAGCCACTTCATCCGGAGATGAGTATTCAACAATTTCG 17231 Query 47940 GCACATAGATTACCACATTTGATAGTACCCAAATTTTGATGATTATTNNNNTTGTTACAT 47999 | ||| |||||| | |||||| || | ||||| ||||| | || |||||| Sbjct 17232 GTACAAAGATTAGAGCTACGGATAGTCCCGAGATTTTTTTGATTGCTCTTTTTATTACAT 17291 Query 48000 GCGTCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCTATCTGAGATTCAATGATAGATTTC 48059 || || ||||| ||||||||||| || ||||||||| | || | ||| || || || | | Sbjct 17292 GCATCTTTGTAGAGCATAAAAGGGGTACCAGTTTCTGTTTGTGCTTCGATTATTGAGTAC 17351 Query 48060 CAAACAGTCCTAGCCTTTATAACAGCTCTAG---CTTTATTATCATGTTCGTATTTAGTA 48116 || | | ||| |||| || |||| |||| || ||||| || || | Sbjct 17352 CATAGCTTTTGTGCC---ATAATAGTTCTACGGCCTTTCCCTTCTTGTTCATACTTTTCA 17408 Query 48117 TATAACTTCTCAAATTCATCCCCATACACATTATCTAACCCAGGACATTCATTAGGACAC 48176 ||||| |||||||||||| |||||||||| | ||| |||||||||||| ||| ||| Sbjct 17409 TATAAAGCCTCAAATTCATCGCCATACACATCAGCTAGACCAGGACATTCACAAGGGCAC 17468 Query 48177 ATCAATGACCAATCCTCATCATTTTTTACTCTAGTCATAAATATATCTGGTATCCAAAGA 48236 |||| | ||| || ||| |||| ||||| ||||||| | ||| ||||||||||| Sbjct 17469 ATCAGGGTCCATTCACCATTTTTTTCAACTCTCTTCATAAAGAGATCAGGTATCCAAAGG 17528 Query 48237 GCTATA-AATAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCTTTTAAGTTCAAG 48295 || ||| |||| ||| | | | | |||||| ||||| ||| | || || || Sbjct 17529 GC-ATAGAATAGATCACGTGCACGAACTTCTTCTTTGCCGTGATTTTTGCGGAGGTCGAG 17587 Query 48296 AAAGTCCATTATATCAGCATGCCATGGTTCTAAATATATTGCCATTACACCTGGTCGTTT 48355 || || | |||||| || |||||||| || |||||||| || | | | || || || || Sbjct 17588 GAACTCAAATATATCGGCGTGCCATGGCTCCAAATATATAGCGAATGCTCCCGGACGCTT 17647 Query 48356 ATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAAT 48415 |||||| |||||||| | ||||||||||||||| || | |||| | ||| || ||||| Sbjct 17648 ATTACCACCTTGATCAACATATCTGGCAGTATTATTGAAGACTCGGAGCATCGGTACAAT 17707 Query 48416 ACCATTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTAT---ATTACT 48472 ||||||||| | ||||| ||||| | |||||| || | || | || || | | Sbjct 17708 ACCATTTGAGTTTCCATTTGTTCCTGCGATATAAGCACCTGTCGCGCGAATCCGATGAAT 17767 Query 48473 AATTGAAATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATC 48532 | || | || |||||||| || ||||||| || | ||| || ||| | ||||| Sbjct 17768 ATTT---AAGCCAATACCACCGGCATTTTTAGAAATCATAGCGCAAGTTTTCAAAGTATC 17824 Query 48533 ATAAATTCCTTCTATACTATCATCTATCATATTTAATAGAAAACAACTAGACATTTGCGG 48592 || ||||| || |||||||| ||| |||||| | || ||| || ||| | ||| | Sbjct 17825 GTAGATTCCATCAATACTATCCTCTTTCATATCAATTAAAAAGCATGAAGAGAGTTGAGA 17884 Query 48593 ATGACAAGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAA 48652 || ||| || | ||||| || || || ||||| |||| |||| | || | Sbjct 17885 TTGTGGAGTACCGGCTGCAAATAGAGTAGGGGAAGCATGCGTAAAGTATTTATTGGACAT 17944 Query 48653 CAATTTATATGTTTCAATAACAGAATCTATATCCCATTGATGTATACCTATAGATACACG 48712 | ||||| || || ||| |||| || || || ||| || || || | || ||||| Sbjct 17945 TAGATTATAAGTCTCTATAGCAGATTCAATGTCATCTTGGTGAATTCCAACAGCGACACG 18004 Query 48713 CATTAACATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGATTT 48772 ||||| ||||| ||| || | || |||||||| | ||| | | |||||||||| | Sbjct 18005 CATTATCATATGTTGTGGCCGCTCCACAATTTTATCATTGAGGCGAAGAAGATATGATCT 18064 Query 48773 TTCCAATGTTTTAAAACCAAAATAGTTGTATGAAAAGTCGTTATCATTAATAATTGATGA 48832 ||||| || || || |||||||| | ||| |||||| ||||| || || | || Sbjct 18065 TTCCAGAGTCTTGAAGCCAAAATACTGGTAATTAAAGTCTCGATCATAAACTATCGCGGA 18124 Query 48833 ATT 48835 ||| Sbjct 18125 ATT 18127 Score = 143 bits (158), Expect = 3e-29 Identities = 301/444 (68%), Gaps = 11/444 (2%) Strand=Plus/Plus Query 47013 GTTCGTAAATAATACATACCAGTCTTTAAACCTAAACTCCATCCATAGAAATGCATACTA 47072 || |||| || ||||| ||||| ||||| ||||| |||||||| ||||||||||| Sbjct 16296 GTACGTAGGTAGTACATGCCAGTTTTTAAGCCTAATTTCCATCCAGCAAAATGCATACTT 16355 Query 47073 GTTAATTTAGAATAACTAGGTTCTGAAATATGAATATTAAGAGATTGACTCTGATCAATA 47132 |||| ||| | | || ||| | |||||||| | || || |||||||||| Sbjct 16356 GTTATTTTGCCCATAGTTGGGTCTTTCAAGTGAATATTCATTGACTGTGACTGATCAATA 16415 Query 47133 AATGCACCTCTATCAGCTGCCATATCTAAAATAACCCTTTGTGGTATCTCCCATACTGTT 47192 |||||||| | |||||| ||||| | | || | |||| |||||||| |||||| Sbjct 16416 AATGCACCACGATCAGCAGCCATCTGAATTATGGTGCGCTGTGAGATCTCCCAAACTGTT 16475 Query 47193 TTATAAATTTGTTTAATGTCTTCTGGGAGATTAG---TATTTTGAATAGATCCTCCgttt 47249 || || | | |||||| || |||| | ||| | |||| |||||||| ||||| | Sbjct 16476 TTGTAGAGTGCTTTAATTTCGGCTGGAATATTTGATATATTCTGAATAGAGCCTCCATCA 16535 Query 47250 tctataattttgttttttaattcatttgacca-aag---ttttcgttcagttaatgtttt 47305 ||| || ||||| | | || ||||| ||| | || ||| || ||| Sbjct 16536 GATATGATGCGATTTTTCATGTTATCAGACCATAAGCCCATATCTACCAG---ATCTTTG 16592 Query 47306 taaAAGATGAGGATTAACAATTTGAAATTCTCCAGATAGTACTCTACGGCTATATATATT 47365 || | ||||| ||||||||||| ||||| | || || | || |||||||| Sbjct 16593 AGTAACCAG-GGATTTACAATTTGAAACTCTCCTGCTAAAACACGGCGTGAGTATATATT 16651 Query 47366 ACTTGTATATGGTTCTATAGATTCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGG 47425 | |||||||| || | | | |||||| ||||| ||||||| || ||| || || Sbjct 16652 AGAGGTATATGGCTCAAAACACTCATTAAATCCAAGAATTTGACTTGTACTTGCGGTTGG 16711 Query 47426 CATGGATGCAACTAATAAGCTATT 47449 ||| | || || | ||||||||| Sbjct 16712 CATTGGGGCTACGAGTAAGCTATT 16735 >seq2264 Length=21137 Score = 199 bits (220), Expect = 4e-46 Identities = 590/917 (64%), Gaps = 67/917 (7%) Strand=Plus/Minus Query 18657 CATTACTCCCATTTTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTC 18716 ||| ||||| |||||||| || | |||| |||||| || || ||||| || || | Sbjct 8717 CATCACTCCGGCCTTTTGATAGTCACCTACTCGTTTTTCGAAAAAGTTAGTCTTCCCAGC 8658 Query 18717 TAATGATATACATTCCATAAAATCAAATGGATTTTTTACATTATATAtttttttGAAT-- 18774 || || ||| |||||| ||||||||||||||||| || || |||| ||| |||| Sbjct 8657 CAAAGAGATATTTTCCATGAAATCAAATGGATTTTTGACTTTGTATACTTTG--GAATTT 8600 Query 18775 CCTAATTCTAATAGTAGTCTATCCGCTACAAATTTAATATATGTGTTCATCATATCACAA 18834 ||||| | || |||| ||| || || |||| || || ||||||| | Sbjct 8599 CCTAACGAGAGGAGAAGTCGATCTGCAACGAATTCGATGTACTGCTTCATCAGAGTGGCG 8540 Query 18835 TTCATTCCTATTAATTTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACT 18894 ||||| || | || || || || || || ||||||||||||||||| | || Sbjct 8539 TTCATGCCGAGTAGAGCGCATGGCAGCGCTTCAGTTAGAAATTCTTGTTCTATCTCGACG 8480 Query 18895 GCCTCTGATATAATAGATACAACTCTATCTTCATTAGGAGG---GTATAGAAGATGTTTA 18951 || | || |||| | ||| || | |||| || || | |||| | Sbjct 8479 GCTTGTGTGATAACATCCTGAACAGA--CTGC-TTAGATGGTCTGTGCTTCAAATGTGAA 8423 Query 18952 AACATCAAACATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAA 19011 || | | ||| ||||| || ||||| || ||||| | || | ||| |||||| Sbjct 8422 AAGAGGAGACAAGCAAAGTCCGTGTGTAGGCCTTCGTCACGTGAAATAAGTTCGTTAGAA 8363 Query 19012 AATGTTAAACCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCA 19071 || |||| |||| ||||| |||| ||| || ||||| || || |||||||| || ||| Sbjct 8362 AAGGTTAGGCCAGCCATCAACCCTCGTTTCTTCAACCAAAAAATGGAAGCAAAGGAACCA 8303 Query 19072 GAAAAGAATATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCA 19131 || ||||| || || ||||| |||||||| || || | || |||| | | | || Sbjct 8302 CTGAAAAATATTCCCTCCACTGCAGCAAAAGCTACAAGACGTTGTCCAAATGTCGACTCT 8243 Query 19132 TTATTATGAATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCA-------- 19183 || | |||||||| | ||||| |||| ||| || || | ||| || | Sbjct 8242 TTGTCTTGAATCCAACGGACGGCCCAGTCAGACTTTTTCTTAATACAAGGTACTATGAAT 8183 Query 19184 ----------------------------------------TTGTCTCTATAGAATTAAAT 19203 ||||||| |||| ||| || Sbjct 8182 CGTTAACGATTATCGCGATAGTGTGGGAAATGGGAATTACTTGTCTCGATAGCATTGAAA 8123 Query 19204 AGATACATACGCTCATCTGTATCTTTAACATATGCATCTATCAATAAACTGTACATTTCT 19263 ||||| | | | || |||||| | || | ||| || || | || |||| Sbjct 8122 AGATAAGTTTTTTGAGCTTGATCTTTTATGTAAGTATCGATTAAAAGCGAATAAGTTTCA 8063 Query 19264 GAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGT 19323 || || |||||||| || || |||||||| ||||| |||| || || | ||||| Sbjct 8062 GAGTGGATATTTTCCATCATAATTTGAAATCCATAAAAGAATCTAGCCTCAGGAATCTGC 8003 Query 19324 ACTTCACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAA 19383 |||||||| | ||| | ||||| | ||||||||||| || || || || |||||| Sbjct 8002 ACTTCACTGCTAAACCGCTCGACGAGGTTTTCATTAACAATCCCGTCTGAGGCGGCAAAA 7943 Query 19384 AATGCTAATACATGTTTAATAAAATGTTTTTCATC-----TGAGGTTAATGT-ATTCCAA 19437 || |||| ||||| ||||| | | |||||| |||| | || ||||||| Sbjct 7942 AAGGCTAGCACATGAGATATAAAGTATCGTTCATCATCATTGAG---ACGGTTATTCCAA 7886 Query 19438 TCATTAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTT 19497 || | ||||||||||| ||||| | || ||| | ||||||||||| ||||| |||||| Sbjct 7885 TCGTGGATATCTTTAGACAAATCAATCTCCTCAGCAGTCCAAAAAGATGCCTCGGCTTTT 7826 Query 19498 TTATACATGTTCCATAT 19514 || ||||| | |||||| Sbjct 7825 TTGTACATATGCCATAT 7809 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562059763033560