Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Erysiphe_20necator_20[genbank_20GCA_5F000798755.1_202014-12-08] 6,979 sequences; 49,465,130 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq3288 178 3e-39 seq1945 111 3e-19 >seq3288 Length=20993 Score = 178 bits (196), Expect = 3e-39 Identities = 163/206 (79%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 |||||||| | |||||| | |||| ||| | |||| ||||| || || |||||| Sbjct 16231 ATACCACCACGAAGACGGAGAACTAGATGAAGGGTAGATTCTTTTTGAATGTTGTAATCA 16172 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 ||||||||||| |||| || | |||||| ||||||||||||||||| |||||||| ||| Sbjct 16171 GATAATGTTCGACCATCCTCAAGTTGTTTGCCAGCAAAGATTAATCTTTGTTGATCGGGT 16112 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || |||||||| || || ||||||||| |||| |||||| || | || || || ||| Sbjct 16111 GGAATTCCTTCCTTGTCCTGTATTTTACTTTTCACATTATCAATGGTGTCGGATGACTCT 16052 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGT 192512 || || || ||||||||||||||||| Sbjct 16051 ACCTCAAGGGTAATGGTTTTACCAGT 16026 Score = 167 bits (184), Expect = 5e-36 Identities = 176/229 (77%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGA 192368 |||||| | |||||| | ||||| || | ||| | || || || || ||||| | Sbjct 16742 ACCACCGCGAAGACGAAGCACTAAGTGGAGAGTCGATTCCTTTTGTATGTTGTAATC-GT 16684 Query 192369 TAAT-GTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTG 192427 ||| || ||| |||| || | ||| || ||||||||||| ||||| ||||| || |||| Sbjct 16683 TAAGAGTACGTCCATCTTCAAGTTGCTTTCCAGCAAAGATCAATCTTTGTTGGTCCGGTG 16624 Query 192428 GTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTA 192487 | || |||||||||||||| || ||| |||| || || ||| | |||||| ||||||| Sbjct 16623 GAATACCTTCTTTATCTTGGATCTTACTTTTGACGTTGTCTATTGTATCTGAAGATTCTA 16564 Query 192488 CTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 |||| ||||| || ||||| ||||| |||||||| | |||||||||||| Sbjct 16563 CTTCAAGAGTTATTGTTTTCCCAGTCAATGTTTTGACAAATATCTGCAT 16515 Score = 156 bits (172), Expect = 8e-33 Identities = 158/206 (77%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || ||||| | |||||| | || || || | || | ||||| ||| ||||| ||| Sbjct 15955 ATGCCACCACGAAGACGAAGGACCAAGTGGAGTGTCGATTCTTTTTGGATGTTATAGTCA 15896 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | |||||| | || || | |||||| |||||||| |||| ||| |||||||| ||| Sbjct 15895 GAAAGTGTTCGACCGTCCTCAAGTTGTTTTCCAGCAAAAATTAGTCTTTGTTGATCGGGT 15836 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || ||||||||||| |||||||||||| |||||||||| || | || ||||| || Sbjct 15835 GGAATTCCTTCTTTGTCTTGTATTTTACTTTTTACATTGTCGATGGTGTCAGACGACTCG 15776 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGT 192512 || |||||||| |||||||| ||||| Sbjct 15775 ACCTCTAGAGTGATGGTTTTTCCAGT 15750 Score = 147 bits (162), Expect = 4e-30 Identities = 161/214 (75%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || || ||||| ||||| | |||||||| | ||| | ||||| ||| || || || Sbjct 16516 ATGCCTCCTCTTAGACGAAGCACTAAATGAAGAGTGGATTCTTTCTGGATGTTGTAGTCT 16457 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 ||||| ||||| |||| || | |||||| || ||||| ||||||| |||||| || || Sbjct 16456 GATAAAGTTCGGCCATCCTCAAGTTGTTTTCCTGCAAATATTAATCGCTGTTGGTCCGGA 16397 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || ||||||||||||||||| ||||| |||| || ||| || | || || || || Sbjct 16396 GGAATTCCTTCTTTATCTTGAATTTTGCTTTTGACGTTATCAATGGTGTCAGAAGACTCG 16337 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTT 192520 ||||| |||||||| |||||||| || | | ||| Sbjct 16336 ACTTCGAGAGTAATAGTTTTACCGGTAACTATTT 16303 Score = 132 bits (146), Expect = 9e-26 Identities = 153/206 (74%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || ||||| | | ||||| ||||| || | ||| | ||||| ||||| || || Sbjct 15677 ATTCCACCGCGTAAACGTAGGACTAAGTGAAGAGTGGATTCTTTTTGTATATTGTAGTCG 15618 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | |||||| |||| ||||| || || ||||| || || ||||||||||| || ||| Sbjct 15617 GAAAGTGTTCGGCCATCCTCCAACTGCTTTCCAGCGAAAATCAATCTCTGTTGGTCTGGT 15558 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || |||||||| || || ||||| |||||||||| |||| ||| || ||||| Sbjct 15557 GGGATGCCTTCTTTGTCCTGAATTTTGCTTTTTACATTGTCGATAGTATCAGATGATTCG 15498 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGT 192512 ||||| || || || ||||| ||||| Sbjct 15497 ACTTCAAGGGTTATAGTTTTGCCAGT 15472 >seq1945 Length=7355 Score = 111 bits (122), Expect = 3e-19 Identities = 126/168 (75%), Gaps = 1/168 (1%) Strand=Plus/Plus Query 192347 CTTTAGAGATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGA 192406 |||| || ||||| |||||||| | |||||| |||| || | |||||||||||||| | Sbjct 3116 CTTTTGA-ATATTGTAATCAGAAAGAGTTCGTCCATCTTCAAGCTGTTTACCAGCAAATA 3174 Query 192407 TTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAG 192466 | || | ||||||||||| || ||||| |||||||| || || || ||| |||||| Sbjct 3175 TCAAACGTTGTTGATCAGGGGGGATTCCCTCTTTATCCTGGATCTTTGCTTTCACATTAT 3234 Query 192467 TTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTA 192514 || | || || || || || |||| || || ||||| ||||||| Sbjct 3235 CAATTGTGTCAGAGGACTCAACCTCTAAGGTGATAGTTTTGCCAGTTA 3282 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984391969336650