Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Erysiphe_20necator_20[genbank_20GCA_5F000798755.1_202014-12-08] 6,979 sequences; 49,465,130 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq3288 134 1e-26 seq3919 123 2e-23 seq1945 118 1e-21 seq1112 102 7e-17 >seq3288 Length=20993 Score = 134 bits (148), Expect = 1e-26 Identities = 168/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| ||| | ||||| | || || ||||| || || || ||||||||| | | Sbjct 16515 ATGCAGATATTTGTCAAAACATTGACTGGGAAAACAATAACTCTTGAAGTAGAATCTTCA 16574 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || ||| |||| | || ||| ||||||||||| |||||||| || || || || ||| Sbjct 16575 GATACAATAGACAACGTCAAAAGTAAGATCCAAGATAAAGAAGGTATTCCACCGGACCAA 16634 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCA-GATTATAA 24882 ||| | ||||||||||| || || || || || || | || || | | ||||| || Sbjct 16635 CAAAGATTGATCTTTGCTGGAAAGCAACTTGAAGA-TGGACGTACTCTTAACGATTACAA 16693 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||| |||||||||||||| || ||||| ||| | || | ||||| || Sbjct 16694 CATACAAAAGGAATCGACTCTCCACTTAGTGCTTCGTCTTCGCGGTGG 16741 Score = 120 bits (132), Expect = 3e-22 Identities = 151/205 (74%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 24728 ACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACCGACACAGTAGA-AACGGTAAAACA 24786 ||||||||||||||||| |||||||| || | | ||||| | || |||| |||| Sbjct 16311 ACCGGTAAAACTATTACTCTCGAAGTCGAGTCTTCTGACACCATTGATAACGTCAAAAGC 16370 Query 24787 AAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAA 24846 ||| || ||||| ||||||||||| ||||| || ||||| || || || ||||| || || Sbjct 16371 AAA-ATTCAAGATAAAGAAGGAATTCCTCCGGACCAACAGCGATTAATATTTGCAGGAAA 16429 Query 24847 ACAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCGACACTACA 24906 ||| || |||||| ||| | ||||| || ||||| || || ||||| || || || Sbjct 16430 ACAACTTGAGGATGGCCGAACTTTATCAGACTACAACATCCAGAAAGAATCCACTCTTCA 16489 Query 24907 CTTGGTGTTGCGATTGCGCGGAGGC 24931 || ||| | || | | |||||| Sbjct 16490 TTTAGTGCTTCGTCTAAGAGGAGGC 16514 Score = 118 bits (130), Expect = 1e-21 Identities = 137/182 (75%), Gaps = 6/182 (3%) Strand=Plus/Plus Query 24728 ACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACCGACACAGTAGAAACGGTAAAACAA 24787 || |||||||| ||||| || || ||||| | ||||||| | || | || ||| Sbjct 16026 ACTGGTAAAACCATTACCCTTGAGGTAGAGTCATCCGACACCATTGATAATGTGAAAAGT 16085 Query 24788 AAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAA 24847 || || || ||||| |||||||| || |||||||||||| | || |||||||| || ||| Sbjct 16086 AAAATACAGGACAAGGAAGGAATTCCACCCGATCAACAAAGATTAATCTTTGCTGGCAAA 16145 Query 24848 CAGCTGGAGGAT--TCGAGAAACA-TGTCAGATTATAACATTCAAAAGGAATCGACACTA 24904 || || |||||| ||| |||| | || ||||| ||||||||||| ||||| || || Sbjct 16146 CAACTTGAGGATGGTCG---AACATTATCTGATTACAACATTCAAAAAGAATCTACCCTT 16202 Query 24905 CA 24906 || Sbjct 16203 CA 16204 Score = 116 bits (128), Expect = 3e-21 Identities = 140/187 (75%), Gaps = 4/187 (2%) Strand=Plus/Plus Query 24728 ACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACCGACACAGTAGAAACGGTAAAACAA 24787 || || ||||| || || || || || || | | ||||| | || | |||||| Sbjct 15750 ACTGGAAAAACCATCACTCTAGAGGTCGAGTCGTCTGACACCATCGACAATGTAAAAAGT 15809 Query 24788 AAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAA 24847 || || ||||||||||||||||| || |||||||||||| | | || ||||| || ||| Sbjct 15810 AAAATACAAGACAAAGAAGGAATTCCACCCGATCAACAAAGACTAATTTTTGCTGGAAAA 15869 Query 24848 CAGCTGGAGGA--TTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCGACACTAC 24905 || || ||||| |||| | || | || || |||||||| ||||| ||||||||||| | Sbjct 15870 CAACTTGAGGACGGTCGA-ACAC-TTTCTGACTATAACATCCAAAAAGAATCGACACTCC 15927 Query 24906 ACTTGGT 24912 ||||||| Sbjct 15928 ACTTGGT 15934 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 24728 ACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACCGACACAGTAGAAACGGTAAAACAA 24787 || || |||||||| || || ||||| ||| | | || || | || | |||||| Sbjct 15472 ACTGGCAAAACTATAACCCTTGAAGTCGAATCATCTGATACTATCGACAATGTAAAAAGC 15531 Query 24788 AAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAA 24847 || || || ||||||||||| || || || || ||||| | ||||| || || || || Sbjct 15532 AAAATTCAGGACAAAGAAGGCATCCCACCAGACCAACAGAGATTGATTTTCGCTGGAAAG 15591 Query 24848 CAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCGACACTACAC 24907 ||| |||||||| ||| | || || || || || ||||| ||||| || || ||| Sbjct 15592 CAGTTGGAGGATGGCCGAACACTTTCCGACTACAATATACAAAAAGAATCCACTCTTCAC 15651 Query 24908 TTGGTGTTGCGATTGCGCGGAGG 24930 || || | || || ||||| || Sbjct 15652 TTAGTCCTACGTTTACGCGGTGG 15674 >seq3919 Length=22905 Score = 123 bits (136), Expect = 2e-23 Identities = 149/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || || | ||||| || || ||||||||||||||||| || || || | | Sbjct 11077 ATGCAAATTTTCGTGAAAACCCTCACGGGTAAAACTATTACGCTTGAGGTGGAGTCATCG 11136 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | |||||| ||| |||||||| || ||||| || || || || ||| Sbjct 11137 GACACCATCGACAATGTAAAATCAAAAATCCAAGATAAGGAAGGCATTCCACCTGACCAA 11196 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 ||||||||||| ||||| || ||||| || ||||| | | |||| || || ||| Sbjct 11197 CAACGTTTGATTTTTGCGGGAAAACAACTCGAGGACGGCCGGACATTGTCTGACTACAAC 11256 Query 24884 ATTCAAAAGGAATCGACACTACA 24906 || ||||| ||||| || || || Sbjct 11257 ATCCAAAAAGAATCTACTCTTCA 11279 >seq1945 Length=7355 Score = 118 bits (130), Expect = 1e-21 Identities = 131/175 (75%), Gaps = 0/175 (0%) Strand=Plus/Minus Query 24719 AAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACCGACACAGTAGAAACG 24778 || || ||||| || |||||||| || | || || || || | |||||| | || | Sbjct 3289 AAGACCCTAACTGGCAAAACTATCACCTTAGAGGTTGAGTCCTCTGACACAATTGATAAT 3230 Query 24779 GTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTT 24838 || ||| ||||||||| || ||||| ||||| || || ||||||||||||||||| ||| Sbjct 3229 GTGAAAGCAAAGATCCAGGATAAAGAGGGAATCCCCCCTGATCAACAACGTTTGATATTT 3170 Query 24839 GCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGG 24893 || || |||||||| || ||| ||| | || ||||| || |||||||||| Sbjct 3169 GCTGGTAAACAGCTTGAAGATGGACGAACTCTTTCTGATTACAATATTCAAAAGG 3115 >seq1112 Length=30899 Score = 102 bits (112), Expect = 7e-17 Identities = 542/859 (63%), Gaps = 55/859 (6%) Strand=Plus/Plus Query 139093 TTGCACACCGCCACTTCGTCGGGGTCGCTGTATTCGACAATTTCGGCACACAAATTA--- 139149 || || || |||||||| || || |||||| |||||||||| ||| | |||| Sbjct 17187 TTACAAACAGCCACTTCATCCGGAGATGAGTATTCAACAATTTCGGTACAAAGATTAGAG 17246 Query 139150 CTACACTTGATCGTACCTAAATTTTGTTGATTGCTTTTTCGGTTACAAGCATCTTTGTAA 139209 |||| ||| || || | ||||| ||||||||| ||| ||||| ||||||||||| Sbjct 17247 CTACG---GATAGTCCCGAGATTTTTTTGATTGCTCTTTTTATTACATGCATCTTTGTAG 17303 Query 139210 AGCATATACGGTGTGCCAGTTTCCACTTGTGTCTCTATAATGAATTTGAACAAGTCCCTA 139269 |||||| | || || |||||||| ||||| || || | |||| | || || Sbjct 17304 AGCATAAAAGGGGTACCAGTTTCTGTTTGTGCTTCGATTA-----TTGAGTA---CCATA 17355 Query 139270 GCTTGTATTTGACGCACGTAA-AGTT-------------CGTCGCGCTCGTACTTTTCGT 139315 ||| |||| || | ||| |||| | || | || |||||||| | Sbjct 17356 GCT----TTTG-TGC-CATAATAGTTCTACGGCCTTTCCCTTCTTGTTCATACTTTTCAT 17409 Query 139316 AGAGTTCGTCGAATCGTTCACCGTAGGCGTCAGAAAGATCGCGACACTTGTCAGGACACA 139375 | | | || ||| || || || | |||| ||| | |||| | ||| |||| Sbjct 17410 ATAAAGCCTCAAATTCATCGCCATACACATCAGCTAGACCAGGACATTCACAAGGGCACA 17469 Query 139376 TGAGCGACCATACGCCGTTCGCCTTGACGCGCCTCATGAACAGATCCGGAATCCACAAAG 139435 | || | |||| | || || | || | | |||| || ||||| || ||||| | | Sbjct 17470 TCAGGGTCCATTCACCATTTTTTTCAACTCTCTTCATAAAGAGATCAGGTATCCAAAGGG 17529 Query 139436 CGAACAGCAAATCGCGCGC-----CTTCTTATCTTCCGAACCCATGTTACGTTTCATGTT 139490 | | | | ||| || || |||||| | | ||| | || || | || Sbjct 17530 CATAGAATAGATCACGTGCACGAACTTCTTCTTTGCCG--TGATTTTTGCG---GAGGTC 17584 Query 139491 AAGGAAATCAAAAACGTCAGCGTGCCATGGTTCCAGATAGATGGCCATTGCGCCTTTCCG 139550 ||||| ||||| | || ||||||||||| |||| ||| || || | ||| || || Sbjct 17585 GAGGAACTCAAATATATCGGCGTGCCATGGCTCCAAATATATAGCGAATGCTCCCGGACG 17644 Query 139551 ---TTTGCCACCTTGATCGACGTGTCGTACAGCATTATTGAATACGCGCAACATCGGCTC 139607 || ||||||||||| || | || ||| ||||||||| || || | |||||| | Sbjct 17645 CTTATTACCACCTTGATCAACATATCTGGCAGTATTATTGAAGACTCGGAGCATCGGTAC 17704 Query 139608 CAGACCGCTCGCTGTTCC----GTTGGTGCTACGGATGGGACTGTTGCGAGCTCGGACGT 139663 | ||| | | |||| ||| ||| | | | |||| ||| || | Sbjct 17705 AATACCATTTGAGTTTCCATTTGTTCCTGCGATATAAGCACCTGTCGCG----CGAATCC 17760 Query 139664 CATGTACATTGATGCCGATTCCGCCGCCAAATTTGGATATTAAAACGCAATCGCGTAATG 139723 ||| | ||| | ||| || || ||| || ||| || || | | ||||| || | Sbjct 17761 GATGAATATTTAAGCCAATACCACCGGCATTTTTAGAAATCATAGCGCAAGTTTTCAAAG 17820 Query 139724 TCTCGTATATACCTCTTATGCTGTCGTCCTGCATCGTGACCAGAAAGCATGACGAAAGTT 139783 | ||||| || || || || || || | ||| | | ||||||||| || |||| Sbjct 17821 TATCGTAGATTCCATCAATACTATCCTCTTTCATATCAATTAAAAAGCATGAAGAGAGTT 17880 Query 139784 GCGGTAGTTTCGTGCCGGCTGCAAACAGAGTAGGACTCGCGTGCGTGAACATTTGTTTCG 139843 | | | || || ||||||||||| |||||||| || ||||| || || || | Sbjct 17881 GAGATTGTGGAGTACCGGCTGCAAATAGAGTAGGGGAAGCATGCGTAAAGTATTTATTGG 17940 Query 139844 ACATCAATTCGTACGTTTCGATGGCGCTCACAATATCCCTTCCGTGGATACCGACAGAGA 139903 |||| | | || || || || || |||| || | ||| || || |||| || Sbjct 17941 ACATTAGATTATAAGTCTCTATAGCAGATTCAATGTCATCTTGGTGAATTCCAACAGCGA 18000 Query 139904 CTCGCATCAGCATATGTTG 139922 | ||||| | ||||||||| Sbjct 18001 CACGCATTATCATATGTTG 18019 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449858352058120