Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Erysiphe_20necator_20[genbank_20GCA_5F000798755.1_202014-12-08] 6,979 sequences; 49,465,130 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq3288 168 1e-36 seq1945 120 6e-22 seq3919 116 7e-21 >seq3288 Length=20993 Score = 168 bits (186), Expect = 1e-36 Identities = 167/216 (77%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654 ||| || |||||||| ||||| ||||| || ||||| || ||||| ||| | | || Sbjct 16730 ACGAAGCACTAAGTGGAGAGTCGATTCCTTTTGTATGTTGTAATCGTTAAGAGTACGTCC 16671 Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714 ||||| ||||| |||||||||||||| | ||||||||| || || || || ||||| || Sbjct 16670 ATCTTCAAGTTGCTTTCCAGCAAAGATCAATCTTTGTTGGTCCGGTGGAATACCTTCTTT 16611 Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTAT 82774 |||||| ||||| ||| || || || || ||||| || ||||||||| | |||||| Sbjct 16610 ATCTTGGATCTTACTTTTGACGTTGTCTATTGTATCTGAAGATTCTACTTCAAGAGTTAT 16551 Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || || || ||||| || || |||||||||||||| Sbjct 16550 TGTTTTCCCAGTCAATGTTTTGACAAATATCTGCAT 16515 Score = 154 bits (170), Expect = 3e-32 Identities = 158/204 (77%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 |||||||| | ||| || ||||| || ||||| ||||||||||| || || || || ||| Sbjct 16513 CCTCCTCTTAGACGAAGCACTAAATGAAGAGTGGATTCTTTCTGGATGTTGTAGTCTGAT 16454 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 | | ||| || || || ||||||||||| ||||| |||| || ||||| || ||||| Sbjct 16453 AAAGTTCGGCCATCCTCAAGTTGTTTTCCTGCAAATATTAATCGCTGTTGGTCCGGAGGA 16394 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTT-ACATTTTCAATCGTATCATTAGGTTCTAC 82762 |||||||| ||||||||||| ||||||||| || || ||||| || ||| || || || Sbjct 16393 ATTCCTTCTTTATCTTGAAT-TTTGCTTTTGACGTTATCAATGGTGTCAGAAGACTCGAC 16335 Query 82763 TTCCAAAGTTATCGTCTTGCCTGT 82786 ||| | ||| || || || || || Sbjct 16334 TTCGAGAGTAATAGTTTTACCGGT 16311 Score = 143 bits (158), Expect = 5e-29 Identities = 126/157 (80%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654 ||| || || ||||| || || |||||||| || || ||||| ||||| || ||| ||| Sbjct 15941 ACGAAGGACCAAGTGGAGTGTCGATTCTTTTTGGATGTTATAGTCAGAAAGTGTTCGACC 15882 Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714 ||| || ||||||||||||||||| ||||||||||||||||| || || |||||||| || Sbjct 15881 GTCCTCAAGTTGTTTTCCAGCAAAAATTAGTCTTTGTTGATCGGGTGGAATTCCTTCTTT 15822 Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCA 82751 ||||| || || ||||||||| || || || ||| Sbjct 15821 GTCTTGTATTTTACTTTTTACATTGTCGATGGTGTCA 15785 Score = 141 bits (156), Expect = 2e-28 Identities = 135/170 (79%), Gaps = 2/170 (1%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | | ||| ||||||| || || ||||||||||| || || || ||||||| Sbjct 16230 TACCACCACGAAGACGGAGAACTAGATGAAGGGTAGATTCTTTTTGAATGTTGTAATCAG 16171 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 ||| ||| ||| || || |||||||| ||||||||||||| |||||||||||| || | Sbjct 16170 ATAATGTTCGACCATCCTCAAGTTGTTTGCCAGCAAAGATTAATCTTTGTTGATCGGGTG 16111 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTT-ACATTTTCAATCGTATC 82750 | ||||||||||| || || || ||| ||||| ||||| ||||| || || Sbjct 16110 GAATTCCTTCCTTGTCCTGTAT-TTTACTTTTCACATTATCAATGGTGTC 16062 >seq1945 Length=7355 Score = 120 bits (132), Expect = 6e-22 Identities = 134/179 (75%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 82623 TTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATT 82682 || || ||||| |||||||| ||| ||| || ||||| || ||||| |||||||| || Sbjct 3117 TTTTGAATATTGTAATCAGAAAGAGTTCGTCCATCTTCAAGCTGTTTACCAGCAAATATC 3176 Query 82683 AGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCA 82742 | | ||||||||| || || ||||| || ||||| || ||||||||||| ||||| ||| Sbjct 3177 AAACGTTGTTGATCAGGGGGGATTCCCTCTTTATCCTGGATCTTTGCTTTCACATTATCA 3236 Query 82743 ATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAA 82801 || || ||| | || || || || || || || ||||| || | ||||| || || Sbjct 3237 ATTGTGTCAGAGGACTCAACCTCTAAGGTGATAGTTTTGCCAGTTAGGGTCTTGACGAA 3295 >seq3919 Length=22905 Score = 116 bits (128), Expect = 7e-21 Identities = 165/232 (71%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 ||||| | | ||| || || | || |||||||||||||| || || || || ||||| Sbjct 11303 CCTCCACGAAGACGAAGTACGAGATGAAGAGTAGATTCTTTTTGGATGTTGTAGTCAGAC 11244 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 | | | ||||| || ||||||||||| ||||| || | | |||||| || || || Sbjct 11243 AATGTCCGGCCGTCCTCGAGTTGTTTTCCCGCAAAAATCAAACGTTGTTGGTCAGGTGGA 11184 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || |||||||||||||| || |||| ||||||||| || || || || | || || Sbjct 11183 ATGCCTTCCTTATCTTGGATTTTTGATTTTACATTGTCGATGGTGTCCGATGACTCCACC 11124 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATTATTA 82815 || | || || || || || || | || || || || || ||||| |||| Sbjct 11123 TCAAGCGTAATAGTTTTACCCGTGAGGGTTTTCACGAAAATTTGCATGATTA 11072 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981739406545881