Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Erysiphe_20necator_20[genbank_20GCA_5F000798755.1_202014-12-08] 6,979 sequences; 49,465,130 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq1112 167 3e-36 seq1802 89.7 6e-13 >seq1112 Length=30899 Score = 167 bits (184), Expect = 3e-36 Identities = 550/843 (65%), Gaps = 33/843 (4%) Strand=Plus/Plus Query 110968 TGCGTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTTCATCTGAATCAAA 111027 ||| ||||| |||||||||||||| | || | | || || || || || || Sbjct 16904 TGCATGATATATGGTTTCAAAGATCTGTTTGTTGAGATGTTTTGCCTCTGGAGAGTCGAA 16963 Query 111028 TGCGTAGCGGCACAAA---ATAAATACATCCGCGAGACCTTGAACACCCAAACCAATAGG 111084 || |||| |||| | ||| ||||| || || |||||||| |||| | | || || Sbjct 16964 TGGCAAGCG---CAAAGCCAAAAACACATCTGCTAGCCCTTGAACTCCCACAGCTATTGG 17020 Query 111085 TCTGTGTCGCATATTAGACTTTCGCGCAGTCTCA---ACGGGATAAAAATTTCTGTCAAT 111141 || ||| || | ||| ||| || || ||| || ||||| |||| ||||| Sbjct 17021 TCGGTGGCGTAAATTGCTCTTACGAGCT---TCAGGCACAGGATAGTAATTAACATCAAT 17077 Query 111142 GACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCATGAAGTTTTTCATAATCAAA 111201 || | || ||||| | |||| || || ||||||||||| | | ||||||| Sbjct 17078 GATTTTATTCAGATTCCTAACTACAACCTGACAGACATCATGAAGTTTGTGAAAATCAAA 17137 Query 111202 AGTGCGAGTCTCTTCATTGACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGC 111261 ||| | || ||| ||||| | || | || | ||||||||||| |||||||| Sbjct 17138 AGTATTATCAGCTGTATTAACATAGGTCGGCAAAGCTAGGGATGCCAAATTACAAACAGC 17197 Query 111262 CGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACATAAGTTGGAACTCTTAATCGT 111321 | |||||| | || ||| || | |||||| ||||| | || || || || || Sbjct 17198 CACTTCATCCGGAGATGAGTATTCAACAATTTCGGTACAAAGATTAGAGCTACGGATAGT 17257 Query 111322 CCCCAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGT 111381 ||| | ||| ||||| || ||||| || || || ||||| ||||||||||| | || || Sbjct 17258 CCCGAGATTTTTTTGATTGCTCTTTTTATTACATGCATCTTTGTAGAGCATAAAAGGGGT 17317 Query 111382 CCCCGTCTCCGTCTGTGATTTGAGAATAGCCTTCCA-AACATCGGCGGCTGGTACAATGG 111440 || || || || |||| || || || | | ||| | | | | || | ||| | Sbjct 17318 ACCAGTTTCTGTTTGTGCTTCGATTATTGAGTACCATAGCTTTTG----TGCCATAATAG 17373 Query 111441 --CGTTGGCCCGTCCC-TCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCA 111497 | |||| |||| || || |||||| || | || ||||| || || || Sbjct 17374 TTCTACGGCCTTTCCCTTCTTGTTCATACTTTTCATATAAAGCCTCAAATTCATCGCCAT 17433 Query 111498 CCGCGTCGGAGAGACCTGGTGCCTTGTC-TGGACAGAAAAGAGACCATTGACCACCTTCC 111556 | | || | ||||| || | || | || || | || | ||||| |||| || Sbjct 17434 ACACATCAGCTAGACCAGG-ACATTCACAAGGGCACATCAGGGTCCATTCACCATTTTTT 17492 Query 111557 TCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAGAGATCTC-TACACCG 111615 ||||| | |||||| || || || || ||||| |||| | || ||||| | | || || Sbjct 17493 TCAACTCTCTTCATAAAGAGATCAGGTATCCAAAGGGCATAGAATAGATCACGTGCA-CG 17551 Query 111616 AGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCCATGATATCCGCGTGCCA 111675 | | ||||| | || || || || | || |||||||| | ||||| |||||||| Sbjct 17552 AACTTCTTCTTTGCCGTGATTTTTGCGGAGGTCGAGGAACTCAAATATATCGGCGTGCCA 17611 Query 111676 TGGCTCAAGATAGACTGCGATAGATCCCTTTCGACGC------CCAGCTTGATTTACATA 111729 |||||| | ||| | |||| | |||| ||||| ||| |||||| ||||| Sbjct 17612 TGGCTCCAAATATATAGCGAATGCTCCC---GGACGCTTATTACCACCTTGATCAACATA 17668 Query 111730 GCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGATTGACCATTTGT 111789 | || || || || || || ||||| || | |||||||| ||| | |||||||| Sbjct 17669 TCTGGCAGTATTATTGAAGACTCGGAGCATCGGTACAATACCATTTGAGTTTCCATTTGT 17728 Query 111790 CCC 111792 || Sbjct 17729 TCC 17731 >seq1802 Length=33555 Score = 89.7 bits (98), Expect = 6e-13 Identities = 271/412 (66%), Gaps = 14/412 (3%) Strand=Plus/Plus Query 11452 ATCAAAACGACCCGGGCGAAGGAGGGCGTCATCAAGGATATCCACGCGATTAGTGGCCGC 11511 |||||| ||||| || || | | || | |||||| | ||| | ||||||| | || Sbjct 9023 ATCAAATCGACCGGGACGCATTAAAGCTTTATCAAGTACATCTGGTCTATTAGTGCCTGC 9082 Query 11512 AATAACCACAA--TGC-CAGTCTCATTGTCAAAGCCATCCATCTCGGTGAGTAATTGATT 11568 | ||| |||| ||| ||| |||| || |||||||| || || | || ||||| Sbjct 9083 GAGAACAACAACTTGCTCAGAGGTATTG---AATCCATCCATTTCAGTTAATATCTGATT 9139 Query 11569 AATTGTTTGTTCTCTCTCATCATTTGCTGG--CATA----CCACCAGCACTGCGTTGCTT 11622 | || ||||| ||||||||| | || | ||| | | | ||| || Sbjct 9140 TAAGGTAGCCTCTCTTTCATCATTTCCACCACCAAATGACCCAACCTCGCCGCGAGATTT 9199 Query 11623 GCCCACCGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTC 11682 ||| | ||||| || ||||| || || | |||||||||| |||| || || | | Sbjct 9200 GCCAATGGCATCGATTTCATCTATAAAAATAATACATGGTGTGTTTTTACGAGCTTCTGC 9259 Query 11683 AAAGAGATCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGTTTGCGGC 11742 || ||||||||||| | | |||||| || |||||||||||||| ||||| | | | Sbjct 9260 GAAAAGATCGCGAACTCGTGAGGCACCGACGCCAACAAACATCTCTACAAATTCAGATCC 9319 Query 11743 A-GAGCACTGGATGAATGGGACATTTGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCT 11801 | |||| || |||||| || | ||| || || || | ||| || | || || | Sbjct 9320 ACTTACACT-GAAGAATGGTACTTGTGACTCGCCTGCCGTAGCTTTAGCTAAAAGTGTTT 9378 Query 11802 TTCCCGTACCTGGCTTACCCGCGAGAAGGGCGCCTCGGGGGATCTTGGCACC 11853 | || || ||||| || | |||| || || || || || |||||||| Sbjct 9379 TCCCAGTTCCTGGTGGTCCGGAAAGAATAGCACCACGTGGTATTTTGGCACC 9430 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627977212058400