Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Erysiphe_20necator_20[genbank_20GCA_5F000798755.1_202014-12-08] 6,979 sequences; 49,465,130 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq3288 129 4e-25 >seq3288 Length=20993 Score = 129 bits (142), Expect = 4e-25 Identities = 153/205 (75%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 ||| ||||| ||||| | ||| ||||| |||||| || || || ||||| || ||||| Sbjct 16514 GCCTCCTCTTAGACGAAGCACTAAATGAAGAGTGGATTCTTTCTGGATGTTGTAGTCTGA 16455 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 | ||||| | || ||||||||||| || ||||||||||| |||||||||||||| || Sbjct 16454 TAAAGTTCGGCCATCCTCAAGTTGTTTTCCTGCAAATATTAATCGCTGTTGGTCCGGAGG 16395 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATA-AAATTGTGTCTTCGCTCTCCA 34657 | ||| || || ||| ||| ||| |||| ||| || ||| ||||| ||| | Sbjct 16394 AATTCCTTCTTTATCT-TGAATTTTGCTTTTGACGTTATCAATGGTGTCAGAAGACTCGA 16336 Query 34658 CTTCCACGGTTATCGTTTTACCGGT 34682 |||| | || || ||||||||||| Sbjct 16335 CTTCGAGAGTAATAGTTTTACCGGT 16311 Score = 113 bits (124), Expect = 3e-20 Identities = 164/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | |||||| | ||| || |||||||| |||||||| ||||| ||||| | Sbjct 16741 CCACCGCGAAGACGAAGCACTAAGTGGAGAGTCGATTCCTTTTGTATGTTGTAATCGTTA 16682 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || | ||||||||||| || || ||||| || || | ||||||||||| || Sbjct 16681 AGAGTACGTCCATCTTCAAGTTGCTTTCCAGCAAAGATCAATCTTTGTTGGTCCGGTGGA 16622 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | || || || ||| |||| || |||| ||| | ||||| ||| || || Sbjct 16621 ATACCTTCTTTATCTTGGATC-TTACTTTTGACGTTGTCTATTGTATCTGAAGATTCTAC 16563 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 ||| | ||||| ||||| || || || ||||| ||||| ||||||||| Sbjct 16562 TTCAAGAGTTATTGTTTTCCCAGTCAATGTTTTGACAAATATCTGCATG 16514 Score = 96.9 bits (106), Expect = 2e-15 Identities = 103/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 ||| || | |||||| | ||||| ||||| || || ||||| |||||||| || || Sbjct 15953 GCCACCACGAAGACGAAGGACCAAGTGGAGTGTCGATTCTTTTTGGATGTTATAGTCAGA 15894 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 ||||||||| |||| ||||||||||| || ||||| |||| | ||||| || || || Sbjct 15893 AAGTGTTCGACCGTCCTCAAGTTGTTTTCCAGCAAAAATTAGTCTTTGTTGATCGGGTGG 15834 Query 34599 CACTCCCTCCTTGTCT 34614 | ||| || |||||| Sbjct 15833 AATTCCTTCTTTGTCT 15818 Score = 89.7 bits (98), Expect = 3e-13 Identities = 146/205 (71%), Gaps = 4/205 (2%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | |||||| | || | ||| || || || ||||||||||| ||||| || Sbjct 16228 CCACCACGAAGACGGAGAACTAGATGAAGGGTAGATTCTTTTTGAATGTTGTAATCAGAT 16169 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | |||||| | || ||||||||||| || ||||| ||||| | ||||| || || || Sbjct 16168 AATGTTCGACCATCCTCAAGTTGTTTGCCAGCAAAGATTAATCTTTGTTGATCGGGTGGA 16109 Query 34600 ACTCCCTCCTTGT-CTGTGATCTTTTGTTTTAACGATA-AAATTGTGTCTTCGCTCTCCA 34657 | ||| ||||||| |||| || ||| |||| || || ||| ||||| ||| | Sbjct 16108 ATTCCTTCCTTGTCCTGT-AT-TTTACTTTTCACATTATCAATGGTGTCGGATGACTCTA 16051 Query 34658 CTTCCACGGTTATCGTTTTACCGGT 34682 | || | ||| || |||||||| || Sbjct 16050 CCTCAAGGGTAATGGTTTTACCAGT 16026 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314702830182107