Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Erysiphe_20necator_20[genbank_20GCA_5F000798755.1_202014-12-08] 6,979 sequences; 49,465,130 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq3919 122 6e-23 seq3288 118 7e-22 >seq3919 Length=22905 Score = 122 bits (134), Expect = 6e-23 Identities = 145/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| |||||||| |||||||||||||| ||||| || || || || || || || || Sbjct 11077 ATGCAAATTTTCGTGAAAACCCTCACGGGTAAAACTATTACGCTTGAGGTGGAGTCATCG 11136 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | ||||| |||||| || || ||||| | || || || ||| Sbjct 11137 GACACCATCGACAATGTAAAATCAAAAATCCAAGATAAGGAAGGCATTCCACCTGACCAA 11196 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || ||||| || ||||| || |||||||| || |||| || || || || |||||| Sbjct 11197 CAACGTTTGATTTTTGCGGGAAAACAACTCGAGGACGGCCGGACATTGTCTGACTACAAC 11256 Query 23791 ATACAAAAAGAGTCCAC 23807 || |||||||| || || Sbjct 11257 ATCCAAAAAGAATCTAC 11273 >seq3288 Length=20993 Score = 118 bits (130), Expect = 7e-22 Identities = 137/185 (74%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 23635 ACGGGAAAAACGATCACTCTCGAAGTTGACTCCACGGACACTGTTGAAATATTAAAACAA 23694 || || ||||| || ||||||||||| || || | ||||| |||| | | ||| Sbjct 16311 ACCGGTAAAACTATTACTCTCGAAGTCGAGTCTTCTGACACCATTGATAACGTCAAAAGC 16370 Query 23695 AAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAACAGCGTTTAATATTTGCCGGCAAA 23754 |||||| || |||||||| | || || || |||||||| ||||||||||| || ||| Sbjct 16371 AAAATTCAAGATAAAGAAGGAATTCCTCCGGACCAACAGCGATTAATATTTGCAGGAAAA 16430 Query 23755 CAACTGGAAGACGAACGCACTTTAGGCGATTACAACATACAAAAAGAGTCCACATTACAT 23814 ||||| || || | || |||||| || |||||||| || ||||| ||||| | ||| Sbjct 16431 CAACTTGAGGATGGCCGAACTTTATCAGACTACAACATCCAGAAAGAATCCACTCTTCAT 16490 Query 23815 TTAGT 23819 ||||| Sbjct 16491 TTAGT 16495 Score = 98.7 bits (108), Expect = 7e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || ||||| | || || ||||| || ||||| ||||| || || | Sbjct 16515 ATGCAGATATTTGTCAAAACATTGACTGGGAAAACAATAACTCTTGAAGTAGAATCTTCA 16574 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || || | || | | ||| || || || ||||||||| | || || || ||| Sbjct 16575 GATACAATAGACAACGTCAAAAGTAAGATCCAAGATAAAGAAGGTATTCCACCGGACCAA 16634 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || | || || ||||| || || ||||| ||||| | ||| ||| | |||||||||| Sbjct 16635 CAAAGATTGATCTTTGCTGGAAAGCAACTTGAAGATGGACGTACTCTTAACGATTACAAC 16694 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGT 23819 |||||||| || || || | || ||||| Sbjct 16695 ATACAAAAGGAATCGACTCTCCACTTAGT 16723 Score = 96.9 bits (106), Expect = 2e-15 Identities = 135/187 (72%), Gaps = 2/187 (1%) Strand=Plus/Plus Query 23635 ACGGGAAAAACGATCACTCTCGAAGTTGACTCCACGGACACTGTTGA-AATATTAAAACA 23693 || || ||||| || || || || || || || | ||||| |||| ||| | |||| Sbjct 16026 ACTGGTAAAACCATTACCCTTGAGGTAGAGTCATCCGACACCATTGATAATGTGAAAAGT 16085 Query 23694 AAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAACAGCGTTTAATATTTGCCGGCAA 23753 |||| | ||||| ||||| | || || |||||||| | ||||| ||||| ||||| Sbjct 16086 AAAA-TACAGGACAAGGAAGGAATTCCACCCGATCAACAAAGATTAATCTTTGCTGGCAA 16144 Query 23754 ACAACTGGAAGACGAACGCACTTTAGGCGATTACAACATACAAAAAGAGTCCACATTACA 23813 |||||| || || | || || ||| ||||||||||| |||||||| || || | || Sbjct 16145 ACAACTTGAGGATGGTCGAACATTATCTGATTACAACATTCAAAAAGAATCTACCCTTCA 16204 Query 23814 TTTAGTT 23820 | ||||| Sbjct 16205 TCTAGTT 16211 Score = 93.3 bits (102), Expect = 3e-14 Identities = 135/189 (71%), Gaps = 4/189 (2%) Strand=Plus/Plus Query 23633 TCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACGGACACTGTTGAAATATTAAAAC 23692 |||| |||||||| |||||||| || || || || | ||||| | || | ||||| Sbjct 15748 TCACTGGAAAAACCATCACTCTAGAGGTCGAGTCGTCTGACACCATCGACAATGTAAAAA 15807 Query 23693 AAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAACAGCGTTTAATATTTGCCGGCA 23752 ||||| ||||||||||| | || || |||||||| | |||| ||||| || | Sbjct 15808 GTAAAATACAAGACAAAGAAGGAATTCCACCCGATCAACAAAGACTAATTTTTGCTGGAA 15867 Query 23753 AACAACTGGAAGACGAACG--CACTTTAGGCGATTACAACATACAAAAAGAGTCCACATT 23810 ||||||| || |||| || |||||| || || ||||| |||||||| || ||| | Sbjct 15868 AACAACTTGAGGACGGTCGAACACTTT--CTGACTATAACATCCAAAAAGAATCGACACT 15925 Query 23811 ACATTTAGT 23819 || || || Sbjct 15926 CCACTTGGT 15934 Score = 87.8 bits (96), Expect = 1e-12 Identities = 144/206 (70%), Gaps = 4/206 (2%) Strand=Plus/Plus Query 23635 ACGGGAAAAACGATCACTCTCGAAGTTGACTCCACGGACACTGTTGAAATATTAAAACAA 23694 || || ||||| || || || ||||| || || | || ||| | || | ||||| Sbjct 15472 ACTGGCAAAACTATAACCCTTGAAGTCGAATCATCTGATACTATCGACAATGTAAAAAGC 15531 Query 23695 AAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAACAGCGTTTAATATTTGCCGGCAAA 23754 |||||| ||||||||||| | || ||||| |||||| | || || || || || || Sbjct 15532 AAAATTCAGGACAAAGAAGGCATCCCACCAGACCAACAGAGATTGATTTTCGCTGGAAAG 15591 Query 23755 CAACTGGAAGACGAACG--CACTTTAGGCGATTACAACATACAAAAAGAGTCCACATTAC 23812 || |||| || | || |||||| ||| ||||| ||||||||||| ||||| | | Sbjct 15592 CAGTTGGAGGATGGCCGAACACTTT--CCGACTACAATATACAAAAAGAATCCACTCTTC 15649 Query 23813 ATTTAGTTTTAAGGTTGCGAGGAGGA 23838 | ||||| || | || || || ||| Sbjct 15650 ACTTAGTCCTACGTTTACGCGGTGGA 15675 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337980850065332