Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Erysiphe_20necator_20[genbank_20GCA_5F000798775.1_202014-12-08] 6,865 sequences; 49,793,988 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq3986 161 9e-35 >seq3986 Length=15657 Score = 161 bits (178), Expect = 9e-35 Identities = 581/901 (64%), Gaps = 61/901 (7%) Strand=Plus/Plus Query 13369 TTTTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATATTT 13428 |||||||| |||| |||| |||||| ||||||||||| || || ||| || |||||| Sbjct 6405 TTTTGATAGTCACCTACTCGTTTTTCGAAAAAGTTAGTCTTCCCAGCCAAAGAGATATTT 6464 Query 13429 TCCATAAAATCGAATGGATTTGTTGACATAA-ACACTTTATCACAACCTAGTTCTAATAA 13487 ||||| ||||| ||||||||| ||||| | | ||||| | |||| | | Sbjct 6465 TCCATGAAATCAAATGGATTT-TTGACTTTGTATACTTTGGAATTTCCTAACGAGAGGAG 6523 Query 13488 TAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAG 13547 | || ||| |||| || || || || || ||| | | ||||| || | ||| Sbjct 6524 AAGTCGATCTGCAACGAATTCGATGTACTGCTTCATCAGAGTGGCGTTCATGCCGAGTAG 6583 Query 13548 TTTTACAGGAATTATATTAGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAAT 13607 || | | ||||| |||||||| |||||| || || | | |||| Sbjct 6584 AGCGCATGGCAGCGCTTCAGTTAGAAATTCTTGTTCTATCTCGACGGCTTGTGTGATAAC 6643 Query 13608 AATCTTAATAATGTCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACACGCAAA 13667 | || || | | ||||| || | || | |||| ||| | | ||| ||||| Sbjct 6644 ATCCTGAACAGACTGCTTAGATGGTCTGTGCTTCAAATGTGAAAAGAGGAGACAAGCAAA 6703 Query 13668 ATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCAT 13727 || || ||||| || || | |||||||||||| ||||| |||| || | ||| Sbjct 6704 GTCCGTGTGTAGGCCTTCGTCACGTGAAATAAGTTCGTTAGAAAAGGTTAGGCCAGCCAT 6763 Query 13728 CAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTC 13787 ||| |||||||| || |||||||| || | ||| || || || || ||||||||||| Sbjct 6764 CAACCCTCGTTTCTTCAACCAAAAAATGGAAGCAAAGGAACCACTGAAAAATATTCCCTC 6823 Query 13788 AACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGT-TTGATATCCATT 13846 ||||||||||| |||| || |||| |||||| | | | ||||| |||| ||||| Sbjct 6824 CACTGCAGCAAAAGCTACAAGACGTTGTCCAAATGTCGACTCTTTGTCTTGA-ATCCAAC 6882 Query 13847 TTCTAGCCCATTCAGAtttttttttAATAAA-------ATCCATTGTT-TCGATT---GC 13895 ||||| ||||| ||||| |||||| | || || ||| ||||| || Sbjct 6883 GGACGGCCCAGTCAGACTTTTTCTTAATACAAGGTACTATGAATCGTTAACGATTATCGC 6942 Query 13896 -ATTGAAT---AAATG----TTCCTTCTC------------------------TTTAGTA 13923 || | | ||||| || ||| || ||| | Sbjct 6943 GATAGTGTGGGAAATGGGAATTACTTGTCTCGATAGCATTGAAAAGATAAGTTTTTTGAG 7002 Query 13924 CTTGA-----AATGTATGTATCAATAAGTAAGC-TATACATTTCAGAGTGTATGTTTTCT 13977 ||||| ||||| ||||| || | |||| ||| |||||||||| || ||||| Sbjct 7003 CTTGATCTTTTATGTAAGTATCGATTA-AAAGCGAATAAGTTTCAGAGTGGATATTTTCC 7061 Query 13978 ATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGTACCTCCGAGTAAAAT 14037 || || ||||| |||||||| ||||||| || | || || || | ||| Sbjct 7062 ATCATAATTTGAAATCCATAAAAGAATCTAGCCTCAGGAATCTGCACTTCACTGCTAAAC 7121 Query 14038 CTTTCTGCCAAGTTTTCATTAACAATACCATCACTAGCTGCAAAAAATGCCA--ATATGT 14095 | || | | ||||||||||||||| || || || |||||||| || | | ||| Sbjct 7122 CGCTCGACGAGGTTTTCATTAACAATCCCGTCTGAGGCGGCAAAAAAGGCTAGCACATGA 7181 Query 14096 TTTTAATAAAGTATTGCTCTTCATTGTTGA---GTTTTTTCCAATCGGCTAAATCCTTAG 14152 | ||||||||| | || |||| |||| | || ||||||||| | ||| |||| Sbjct 7182 GAT--ATAAAGTATCGTTCATCATCATTGAGACGGTTATTCCAATCGTGGATATCTTTAG 7239 Query 14153 AAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCTTTTTTATACATTACCCATA 14212 | | ||| | || ||| | ||||||||| || | |||||||| ||||| ||||| Sbjct 7240 ACAAATCAATCTCCTCAGCAGTCCAAAAAGATGCCTCGGCTTTTTTGTACATATGCCATA 7299 Query 14213 T 14213 | Sbjct 7300 T 7300 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478547731098600