Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Erysiphe_20necator_20[genbank_20GCA_5F000798775.1_202014-12-08] 6,865 sequences; 49,793,988 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq1897 120 2e-22 seq2201 104 2e-17 >seq1897 Length=19642 Score = 120 bits (132), Expect = 2e-22 Identities = 138/186 (74%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 15154 AACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTC 15213 ||||| ||||||||| || |||||||| ||||||||||| || ||| | || || Sbjct 4628 AACTAGATGAAGGGTAGATTCTTTTTGAATGTTGTAATCAGATAATGTTCGACCATCCTC 4687 Query 15214 TAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACA 15273 | |||||||||||| | || || | |||||| ||| |||||||||||| ||||| Sbjct 4688 AAGTTGTTTGCCAGCAAAGATTAATCTTTGTTGATCGGGTGGAATTCCTTCCTTGTCCTG 4747 Query 15274 AATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333 ||||| || || ||| | || ||||| ||| ||||| || | |||||||||||| Sbjct 4748 TATTTTACTTTTCACATTATCAATGGTGTCGGATGACTCTACCTCAAGGGTAATGGTTTT 4807 Query 15334 ACCTGT 15339 ||| || Sbjct 4808 ACCAGT 4813 Score = 116 bits (128), Expect = 3e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 ||||| || || || || || |||||||||||||||||| | ||| | | | ||||| Sbjct 4116 ACTAAGTGGAGAGTCGATTCCTTTTGTATGTTGTAATCGTTAAGAGTACGTCCATCTTCA 4175 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 | ||| || ||||| | ||||| | ||||||||| |||||| |||||||| || Sbjct 4176 AGTTGCTTTCCAGCAAAGATCAATCTTTGTTGGTCCGGTGGAATACCTTCTTTATCTTGG 4235 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 || || || || || | ||||| ||||| | |||||| || | || || ||||| Sbjct 4236 ATCTTACTTTTGACGTTGTCTATTGTATCTGAAGATTCTACTTCAAGAGTTATTGTTTTC 4295 Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || |||| ||||| ||||| || ||||| Sbjct 4296 CCAGTCAATGTTTTGACAAATATCTGCAT 4324 Score = 105 bits (116), Expect = 5e-18 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 ||||| | || | || ||||| ||||| ||||| ||||||||||| ||||| ||| Sbjct 5165 CCACCGCGTAAACGTAGGACTAAGTGAAGAGTGGATTCTTTTTGTATATTGTAGTCGGAA 5224 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 || ||| | || || || || || |||||| | ||||| | |||||||| ||| Sbjct 5225 AGTGTTCGGCCATCCTCCAACTGCTTTCCAGCGAAAATCAATCTCTGTTGGTCTGGTGGG 5284 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 || ||||||||||| ||||||||| |||||| | || || ||||| ||| || Sbjct 5285 ATGCCTTCTTTGTCCTGAATTTTGCTTTTTACATTGTCGATAGTATCAGATGATTCGACT 5344 Query 15317 TCTAAGGTAATGGTTTTACCTGT 15339 || | ||| || ||||| || || Sbjct 5345 TCAAGGGTTATAGTTTTGCCAGT 5367 Score = 100 bits (110), Expect = 2e-16 Identities = 133/185 (72%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 ||||||||||| ||||| ||||| || |||||||| || || | ||| | || || Sbjct 4344 ACTAAATGAAGAGTGGATTCTTTCTGGATGTTGTAGTCTGATAAAGTTCGGCCATCCTCA 4403 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 | |||||| || || |||| || || |||||||| |||||||||||||| || | Sbjct 4404 AGTTGTTTTCCTGCAAATATTAATCGCTGTTGGTCCGGAGGAATTCCTTCTTTATCTTGA 4463 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 |||||||| || || | || ||||| || | || || || | ||||| |||||| Sbjct 4464 ATTTTGCTTTTGACGTTATCAATGGTGTCAGAAGACTCGACTTCGAGAGTAATAGTTTTA 4523 Query 15335 CCTGT 15339 || || Sbjct 4524 CCGGT 4528 Score = 82.4 bits (90), Expect = 6e-11 Identities = 129/185 (70%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || || || || || || |||||||| ||||| || || || ||| |||| || Sbjct 4905 ACCAAGTGGAGTGTCGATTCTTTTTGGATGTTATAGTCAGAAAGTGTTCGACCGTCCTCA 4964 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 | |||||| ||||| | || | | |||||| ||| |||||||||||||||||| Sbjct 4965 AGTTGTTTTCCAGCAAAAATTAGTCTTTGTTGATCGGGTGGAATTCCTTCTTTGTCTTGT 5024 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 ||||| || |||||| | || ||||| || || || |||| || |||||||| Sbjct 5025 ATTTTACTTTTTACATTGTCGATGGTGTCAGACGACTCGACCTCTAGAGTGATGGTTTTT 5084 Query 15335 CCTGT 15339 || || Sbjct 5085 CCAGT 5089 >seq2201 Length=24903 Score = 104 bits (114), Expect = 2e-17 Identities = 150/207 (72%), Gaps = 6/207 (3%) Strand=Plus/Minus Query 15160 ATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCG--CGTCTTCTAAT 15217 |||||| || || |||||||| |||||||| || | ||| || |||| || | | Sbjct 11280 ATGAAGAGTAGATTCTTTTTGGATGTTGTAGTCAG--ACAATGTCCGGCCGTCCTCGAGT 11223 Query 15218 TGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATT 15277 ||||| || || | ||||||||||||||||| |||||| ||||| || || ||| Sbjct 11222 TGTTTTCCCGCAAAAATCAAACGTTGTTGGTCAGGTGGAATGCCTTCCTTATCTTGGATT 11163 Query 15278 TTGCTCTTTACAATTTCTATGGTATCGCTATTT-TCTACATCTAAGGTAATGGTTTTACC 15336 || |||||| | || ||||| || | || || || || | ||||| |||||||| Sbjct 11162 TTTGATTTTACATTGTCGATGGTGTC-CGATGACTCCACCTCAAGCGTAATAGTTTTACC 11104 Query 15337 TGTCAGAGTTTTTACAAAAATTTGCAT 15363 || || ||||| || ||||||||||| Sbjct 11103 CGTGAGGGTTTTCACGAAAATTTGCAT 11077 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362148897484965