Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Erysiphe_20necator_20[genbank_20GCA_5F000798775.1_202014-12-08] 6,865 sequences; 49,793,988 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq1897 159 8e-34 seq2201 150 4e-31 seq574 129 1e-24 seq3986 109 1e-18 >seq1897 Length=19642 Score = 159 bits (176), Expect = 8e-34 Identities = 166/215 (77%), Gaps = 2/215 (1%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || |||||||| | ||| |||| ||| | || ||||||||||| || || ||||| Sbjct 4323 ATGCCTCCTCTTAGACGAAGCACTAAATGAAGAGTGGATTCTTTCTGGATGTTGTAGTCT 4382 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 |||| ||||| || || || ||||||||||| ||||| |||| | |||||| || ||| Sbjct 4383 GATAAAGTTCGGCCATCCTCAAGTTGTTTTCCTGCAAATATTAATCGCTGTTGGTCCGGA 4442 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTT-ACATTTTCTACGGTATCGCTAGGTTC 104508 || |||||||||||||| ||||| ||||||||| || || || | ||| || || || Sbjct 4443 GGAATTCCTTCTTTATCTTGAAT-TTTGCTTTTGACGTTATCAATGGTGTCAGAAGACTC 4501 Query 104509 TACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTT 104543 || || || |||||||| ||||| |||| | ||| Sbjct 4502 GACTTCGAGAGTAATAGTTTTACCGGTAACTATTT 4536 Score = 152 bits (168), Expect = 1e-31 Identities = 150/191 (79%), Gaps = 2/191 (1%) Strand=Plus/Plus Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407 || |||||||| | ||||||||||| ||||| || || ||||||| |||| ||| || Sbjct 4626 AGAACTAGATGAAGGGTAGATTCTTTTTGAATGTTGTAATCAGATAATGTTCGACCATCC 4685 Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467 || |||||||| |||||||| |||| || |||||||| || || |||||||| || ||| Sbjct 4686 TCAAGTTGTTTGCCAGCAAAGATTAATCTTTGTTGATCGGGTGGAATTCCTTCCTTGTCC 4745 Query 104468 TGAATCTTTGCTTTT-ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526 || || ||| ||||| ||||| || | ||| ||| | |||||||| || ||||| || Sbjct 4746 TGTAT-TTTACTTTTCACATTATCAATGGTGTCGGATGACTCTACCTCAAGGGTAATGGT 4804 Query 104527 CTTACCAGTAA 104537 |||||||||| Sbjct 4805 TTTACCAGTAA 4815 Score = 147 bits (162), Expect = 5e-30 Identities = 137/174 (79%), Gaps = 0/174 (0%) Strand=Plus/Plus Query 104362 TGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCC 104421 ||| |||||||| || || ||||||||||| || |||| |||||| || ||||||||||| Sbjct 4916 TGTCGATTCTTTTTGGATGTTATAGTCAGAAAGTGTTCGACCGTCCTCAAGTTGTTTTCC 4975 Query 104422 AGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTT 104481 |||||||||||| || |||||||| || || ||||||||||| || || || || ||| Sbjct 4976 AGCAAAAATTAGTCTTTGTTGATCGGGTGGAATTCCTTCTTTGTCTTGTATTTTACTTTT 5035 Query 104482 TACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGT 104535 |||||| || | ||| || | || |||||||| || || || || ||||| Sbjct 5036 TACATTGTCGATGGTGTCAGACGACTCGACCTCTAGAGTGATGGTTTTTCCAGT 5089 Score = 127 bits (140), Expect = 5e-24 Identities = 156/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 ||| |||| || | || ||||| || || || || || || ||||| | || || Sbjct 4112 AAGCACTAAGTGGAGAGTCGATTCCTTTTGTATGTTGTAATCGTTAAGAGTACGTCCATC 4171 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 ||| ||||| ||||||||||| || | || ||||| || || || || ||||||||||| Sbjct 4172 TTCAAGTTGCTTTCCAGCAAAGATCAATCTTTGTTGGTCCGGTGGAATACCTTCTTTATC 4231 Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526 || ||||| ||| || || |||| ||||| || |||||| || || || || || Sbjct 4232 TTGGATCTTACTTTTGACGTTGTCTATTGTATCTGAAGATTCTACTTCAAGAGTTATTGT 4291 Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || ||||| | |||||| |||||||||||||| Sbjct 4292 TTTCCCAGTCAATGTTTTGACAAATATCTGCAT 4324 >seq2201 Length=24903 Score = 150 bits (166), Expect = 4e-31 Identities = 175/236 (74%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 104324 TTATTTATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTA 104383 || ||| ||| || | || | |||||| ||||| | ||||||||||| || || || Sbjct 11312 TTCTTTGCTCCTCCACGAAGACGAAGTACGAGATGAAGAGTAGATTCTTTTTGGATGTTG 11253 Query 104384 TAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGA 104443 |||||||| | || | ||||| || ||||||||||| |||||||| | | ||||| Sbjct 11252 TAGTCAGACAATGTCCGGCCGTCCTCGAGTTGTTTTCCCGCAAAAATCAAACGTTGTTGG 11193 Query 104444 TCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTA 104503 ||||| || || ||||| ||||| || || |||| ||||||||| || | ||| || Sbjct 11192 TCAGGTGGAATGCCTTCCTTATCTTGGATTTTTGATTTTACATTGTCGATGGTGTCCGAT 11133 Query 104504 GGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 | || ||||| || |||||||| ||||| || || ||||| || || || ||||| Sbjct 11132 GACTCCACCTCAAGCGTAATAGTTTTACCCGTGAGGGTTTTCACGAAAATTTGCAT 11077 >seq574 Length=26839 Score = 129 bits (142), Expect = 1e-24 Identities = 136/179 (76%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 104372 TTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATT 104431 || |||||||| || ||||| ||||||| || ||||| || ||||| |||||||| || Sbjct 3117 TTTTGAATATTGTAATCAGAAAGAGTTCGTCCATCTTCAAGCTGTTTACCAGCAAATATC 3176 Query 104432 AGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCT 104491 | | ||||||||||| || ||||| ||||||||||| ||||||||||| ||||| || Sbjct 3177 AAACGTTGTTGATCAGGGGGGATTCCCTCTTTATCCTGGATCTTTGCTTTCACATTATCA 3236 Query 104492 ACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAA 104550 | || || | || ||||||| || ||||| || ||||| || || || || || Sbjct 3237 ATTGTGTCAGAGGACTCAACCTCTAAGGTGATAGTTTTGCCAGTTAGGGTCTTGACGAA 3295 >seq3986 Length=15657 Score = 109 bits (120), Expect = 1e-18 Identities = 201/294 (68%), Gaps = 3/294 (1%) Strand=Plus/Minus Query 268733 ATATGGAGGATGTACAAACAGGCCGTTGCTTCTTTTTGGACTGTAGAAGAAGTAGATCTG 268792 |||||| ||||||||| | |||| || ||||||||||||| || || | ||| || Sbjct 7300 ATATGGCATATGTACAAAAAAGCCGAGGCATCTTTTTGGACTGCTGAGGAGATTGATTTG 7241 Query 268793 TCTTATGACTTAATAGATTGGAAAAA---TTTAAAACCAGAAGAAAGAAGATTTATATCT 268849 ||| | || | |||||||| || | | || || ||| || ||||||||| Sbjct 7240 TCTAAAGATATCCACGATTGGAATAACCGTCTCAATGATGATGAACGATACTTTATATCT 7181 Query 268850 TATATTCTTGCGTTTTTTGCAGTTAGTGATGGTATCGTTAACGAAAATCTAGTAGAGAAG 268909 || | || || |||||||| | || || || ||||| ||||| || || ||| | Sbjct 7180 CATGTGCTAGCCTTTTTTGCCGCCTCAGACGGGATTGTTAATGAAAACCTCGTCGAGCGG 7121 Query 268910 TTCTGTCAAGAGGTACAGATTCCTGAAGCCAGATGTTTTTACGGATTCCAGATAGCTATA 268969 || | || || ||||||||||| || |||| ||||| ||||| || || || Sbjct 7120 TTTAGCAGTGAAGTGCAGATTCCTGAGGCTAGATTCTTTTATGGATTTCAAATTATGATG 7061 Query 268970 GAAAATATTCATTCAGAGATGTACAGTCTATTAATAGATACTTATATAGATGAT 269023 |||||||| || || || | || || ||||| |||||||| ||| | ||| Sbjct 7060 GAAAATATCCACTCTGAAACTTATTCGCTTTTAATCGATACTTACATAAAAGAT 7007 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151297125515420