Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Erysiphe_20necator_20[genbank_20GCA_5F000798775.1_202014-12-08] 6,865 sequences; 49,793,988 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq1897 104 2e-17 seq2201 100 3e-16 >seq1897 Length=19642 Score = 104 bits (114), Expect = 2e-17 Identities = 105/136 (77%), Gaps = 2/136 (1%) Strand=Plus/Plus Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290 |||||||| ||||| || |||||||| || |||||||| |||| | || || | || Sbjct 4340 AAGCACTAAATGAAGAGTGGATTCTTTCTGGATGTTGTAGTCTGATAAAGTTCGGCCATC 4399 Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350 ||||| || || || ||| | || | ||||| ||||| ||||||||||||||||| || Sbjct 4400 CTCAAGTTGTTTTCCTGCAAATATTAATCGCTGTTGGTCCGGAGGAATTCCTTCTTTATC 4459 Query 64351 TTGTATTTTTTGCTTT 64366 ||| | ||||||||| Sbjct 4460 TTGAA--TTTTGCTTT 4473 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| ||||| | | |||||||| || | |||||||| ||||| ||||||||||| Sbjct 4097 ACCACCGCGAAGACGAAGCACTAAGTGGAGAGTCGATTCCTTTTGTATGTTGTAATCGTT 4156 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | || || | |||||||| ||||| || ||| | || | | || ||||| || || Sbjct 4157 AAGAGTACGTCCATCTTCAAGTTGCTTTCCAGCAAAGATCAATCTTTGTTGGTCCGGTGG 4216 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 ||| |||||||| ||||| || || || || || | |||||| | || || Sbjct 4217 AATACCTTCTTTATCTTGGATCTTACTTTTGACGTTGTCTATTGTATCTGAAGATTCTAC 4276 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||| | ||||| || || || ||||| ||||| || || || ||||| Sbjct 4277 TTCAAGAGTTATTGTTTTCCCAGTCAATGTTTTGACAAATATCTGCAT 4324 Score = 96.9 bits (106), Expect = 3e-15 Identities = 98/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || |||||||||| || ||||||||||||||||||||||| | | || || | || Sbjct 4626 AGAACTAGATGAAGGGTAGATTCTTTTTGAATGTTGTAATCAGATAATGTTCGACCATCC 4685 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 ||||| || ||||| ||| | || | | || || ||||| ||||||||||| || || Sbjct 4686 TCAAGTTGTTTGCCAGCAAAGATTAATCTTTGTTGATCGGGTGGAATTCCTTCCTTGTCC 4745 Query 64352 TGTATTTT 64359 |||||||| Sbjct 4746 TGTATTTT 4753 Score = 91.5 bits (100), Expect = 1e-13 Identities = 88/113 (78%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 |||||||||||||| ||||| || || | | || || |||| ||||| || || || Sbjct 4917 GTCGATTCTTTTTGGATGTTATAGTCAGAAAGTGTTCGACCGTCCTCAAGTTGTTTTCCA 4976 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTT 64359 ||| |||| || | || || ||||| |||||||||||||| ||||||||||| Sbjct 4977 GCAAAAATTAGTCTTTGTTGATCGGGTGGAATTCCTTCTTTGTCTTGTATTTT 5029 >seq2201 Length=24903 Score = 100 bits (110), Expect = 3e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290 ||| || ||||||| || ||||||||||| |||||||| || | | || || |||| Sbjct 11289 AAGTACGAGATGAAGAGTAGATTCTTTTTGGATGTTGTAGTCAGACAATGTCCGGCCGTC 11230 Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350 || || || || || ||| |||| | || || ||||| || ||||| ||||| || || Sbjct 11229 CTCGAGTTGTTTTCCCGCAAAAATCAAACGTTGTTGGTCAGGTGGAATGCCTTCCTTATC 11170 Query 64351 TTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410 ||| |||||| |||||| || | || || | ||||| || | || | || Sbjct 11169 TTGGATTTTTGATTTTACATTGTCGATGGTGTCCGATGACTCCACCTCAAGCGTAATAGT 11110 Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || || || | ||||| |||||||||||||| Sbjct 11109 TTTACCCGTGAGGGTTTTCACGAAAATTTGCAT 11077 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499601924230600