Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Erysiphe_20necator_20[genbank_20GCA_5F000798775.1_202014-12-08] 6,865 sequences; 49,793,988 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq1897 127 1e-24 seq2201 113 3e-20 >seq1897 Length=19642 Score = 127 bits (140), Expect = 1e-24 Identities = 142/188 (76%), Gaps = 4/188 (2%) Strand=Plus/Plus Query 14967 AACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCG--CGTCT 15024 ||||| |||||||||||| |||||||| ||||||||||| || ||| ||| | || Sbjct 4628 AACTAGATGAAGGGTAGATTCTTTTTGAATGTTGTAATCA--GATAATGTTCGACCATCC 4685 Query 15025 TCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCA 15084 || | |||||||||||| | || || | ||||| ||| |||||||||||||||||| Sbjct 4686 TCAAGTTGTTTGCCAGCAAAGATTAATCTTTGTTGATCGGGTGGAATTCCTTCCTTGTCC 4745 Query 15085 CAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTT 15144 ||||| ||||| ||| | || || || ||| ||||| || | |||||||||| Sbjct 4746 TGTATTTTACTTTTCACATTATCAATGGTGTCGGATGACTCTACCTCAAGGGTAATGGTT 4805 Query 15145 TTACCTGT 15152 ||||| || Sbjct 4806 TTACCAGT 4813 Score = 114 bits (126), Expect = 9e-21 Identities = 147/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| || || | || ||||| ||||| || || ||||||||||| ||||| ||| Sbjct 5165 CCACCGCGTAAACGTAGGACTAAGTGAAGAGTGGATTCTTTTTGTATATTGTAGTCGGAA 5224 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 || ||| | || || || || || |||||| | ||||| | ||||||||| ||| Sbjct 5225 AGTGTTCGGCCATCCTCCAACTGCTTTCCAGCGAAAATCAATCTCTGTTGGTCTGGTGGG 5284 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 || ||||| ||||| |||||||||||||||| | || |||||||| ||| || Sbjct 5285 ATGCCTTCTTTGTCCTGAATTTTGCTTTTTACATTGTCGATAGTATCAGATGATTCGACT 5344 Query 15130 TCTAAGGTAATGGTTTTACCTGT 15152 || | ||| || ||||| || || Sbjct 5345 TCAAGGGTTATAGTTTTGCCAGT 5367 Score = 111 bits (122), Expect = 1e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCT 15027 ||||| || || || || || |||||||||||||||||| | ||| | | | ||||| Sbjct 4116 ACTAAGTGGAGAGTCGATTCCTTTTGTATGTTGTAATCGTTAAGAGTACGTCCATCTTCA 4175 Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087 | ||| || ||||| | ||||| | |||||||| |||||| ||||| || || Sbjct 4176 AGTTGCTTTCCAGCAAAGATCAATCTTTGTTGGTCCGGTGGAATACCTTCTTTATCTTGG 4235 Query 15088 ATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTA 15147 || || ||||| || | ||||| ||||| | |||||| || | || || ||||| Sbjct 4236 ATCTTACTTTTGACGTTGTCTATTGTATCTGAAGATTCTACTTCAAGAGTTATTGTTTTC 4295 Query 15148 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || |||| ||||| ||||| || ||||| Sbjct 4296 CCAGTCAATGTTTTGACAAATATCTGCAT 4324 Score = 93.3 bits (102), Expect = 3e-14 Identities = 134/187 (72%), Gaps = 4/187 (2%) Strand=Plus/Plus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAA--TTCTCGCGTCTT 15025 ||||||||||| || || ||||| || |||||||| | |||| || ||| | || | Sbjct 4344 ACTAAATGAAGAGTGGATTCTTTCTGGATGTTGTAGT--CTGATAAAGTTCGGCCATCCT 4401 Query 15026 CTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCAC 15085 | | |||||| || || |||| || ||||||||||| ||||||||||| || || Sbjct 4402 CAAGTTGTTTTCCTGCAAATATTAATCGCTGTTGGTCCGGAGGAATTCCTTCTTTATCTT 4461 Query 15086 AAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTT 15145 |||||||||||| || | || || || || | || || || | ||||| |||| Sbjct 4462 GAATTTTGCTTTTGACGTTATCAATGGTGTCAGAAGACTCGACTTCGAGAGTAATAGTTT 4521 Query 15146 TACCTGT 15152 |||| || Sbjct 4522 TACCGGT 4528 >seq2201 Length=24903 Score = 113 bits (124), Expect = 3e-20 Identities = 152/207 (73%), Gaps = 6/207 (3%) Strand=Plus/Minus Query 14973 ATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCG--CGTCTTCTAAT 15030 |||||| ||||| |||||||| |||||||| || || ||| || |||| || | | Sbjct 11280 ATGAAGAGTAGATTCTTTTTGGATGTTGTAGTCA--GACAATGTCCGGCCGTCCTCGAGT 11223 Query 15031 TGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATT 15090 ||||| || || | |||||||| |||||||| |||||| |||||||| || ||| Sbjct 11222 TGTTTTCCCGCAAAAATCAAACGTTGTTGGTCAGGTGGAATGCCTTCCTTATCTTGGATT 11163 Query 15091 TTGCTTTTTACAATTTCTATAGTATCGCTATTT-TCTACGTCTAAGGTAATGGTTTTACC 15149 || ||||||| | || || || || | || || || || | ||||| |||||||| Sbjct 11162 TTTGATTTTACATTGTCGATGGTGTC-CGATGACTCCACCTCAAGCGTAATAGTTTTACC 11104 Query 15150 TGTCAGAGTTTTTACAAAAATTTGCAT 15176 || || ||||| || ||||||||||| Sbjct 11103 CGTGAGGGTTTTCACGAAAATTTGCAT 11077 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357362098016525