Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Erysiphe_20necator_20[genbank_20GCA_5F000798775.1_202014-12-08] 6,865 sequences; 49,793,988 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq2084 383 2e-101 seq3986 199 4e-46 >seq2084 Length=12802 Score = 383 bits (424), Expect = 2e-101 Identities = 665/963 (69%), Gaps = 14/963 (1%) Strand=Plus/Plus Query 47880 GCTATAGATGCTAGATTACATACAGCTACCTCATTTGGATTAGTATATTGTATTATTTCA 47939 |||| ||||| | |||||| ||||| || |||| ||| | |||| | ||||| Sbjct 8008 GCTAGGGATGCCAAATTACAAACAGCCACTTCATCCGGAGATGAGTATTCAACAATTTCG 8067 Query 47940 GCACATAGATTACCACATTTGATAGTACCCAAATTTTGATGATTATTNNNNTTGTTACAT 47999 | ||| |||||| | |||||| || | ||||| ||||| | || |||||| Sbjct 8068 GTACAAAGATTAGAGCTACGGATAGTCCCGAGATTTTTTTGATTGCTCTTTTTATTACAT 8127 Query 48000 GCGTCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCTATCTGAGATTCAATGATAGATTTC 48059 || || ||||| ||||||||||| || ||||||||| | || | ||| || || || | | Sbjct 8128 GCATCTTTGTAGAGCATAAAAGGGGTACCAGTTTCTGTTTGTGCTTCGATTATTGAGTAC 8187 Query 48060 CAAACAGTCCTAGCCTTTATAACAGCTCTAG---CTTTATTATCATGTTCGTATTTAGTA 48116 || | | ||| |||| || |||| |||| || ||||| || || | Sbjct 8188 CATAGCTTTTGTGCC---ATAATAGTTCTACGGCCTTTCCCTTCTTGTTCATACTTTTCA 8244 Query 48117 TATAACTTCTCAAATTCATCCCCATACACATTATCTAACCCAGGACATTCATTAGGACAC 48176 ||||| |||||||||||| |||||||||| | ||| |||||||||||| ||| ||| Sbjct 8245 TATAAAGCCTCAAATTCATCGCCATACACATCAGCTAGACCAGGACATTCACAAGGGCAC 8304 Query 48177 ATCAATGACCAATCCTCATCATTTTTTACTCTAGTCATAAATATATCTGGTATCCAAAGA 48236 |||| | ||| || ||| |||| ||||| ||||||| | ||| ||||||||||| Sbjct 8305 ATCAGGGTCCATTCACCATTTTTTTCAACTCTCTTCATAAAGAGATCAGGTATCCAAAGG 8364 Query 48237 GCTATA-AATAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCTTTTAAGTTCAAG 48295 || ||| |||| ||| | | | | |||||| ||||| ||| | || || || Sbjct 8365 GC-ATAGAATAGATCACGTGCACGAACTTCTTCTTTGCCGTGATTTTTGCGGAGGTCGAG 8423 Query 48296 AAAGTCCATTATATCAGCATGCCATGGTTCTAAATATATTGCCATTACACCTGGTCGTTT 48355 || || | |||||| || |||||||| || |||||||| || | | | || || || || Sbjct 8424 GAACTCAAATATATCGGCGTGCCATGGCTCCAAATATATAGCGAATGCTCCCGGACGCTT 8483 Query 48356 ATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAAT 48415 |||||| |||||||| | ||||||||||||||| || | |||| | ||| || ||||| Sbjct 8484 ATTACCACCTTGATCAACATATCTGGCAGTATTATTGAAGACTCGGAGCATCGGTACAAT 8543 Query 48416 ACCATTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTAT---ATTACT 48472 ||||||||| | ||||| ||||| | |||||| || | || | || || | | Sbjct 8544 ACCATTTGAGTTTCCATTTGTTCCTGCGATATAAGCACCTGTCGCGCGAATCCGATGAAT 8603 Query 48473 AATTGAAATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATC 48532 | || | || |||||||| || ||||||| || | ||| || ||| | ||||| Sbjct 8604 ATTT---AAGCCAATACCACCGGCATTTTTAGAAATCATAGCGCAAGTTTTCAAAGTATC 8660 Query 48533 ATAAATTCCTTCTATACTATCATCTATCATATTTAATAGAAAACAACTAGACATTTGCGG 48592 || ||||| || |||||||| ||| |||||| | || ||| || ||| | ||| | Sbjct 8661 GTAGATTCCATCAATACTATCCTCTTTCATATCAATTAAAAAGCATGAAGAGAGTTGAGA 8720 Query 48593 ATGACAAGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAA 48652 || ||| || | ||||| || || || ||||| |||| |||| | || | Sbjct 8721 TTGTGGAGTACCGGCTGCAAATAGAGTAGGGGAAGCATGCGTAAAGTATTTATTGGACAT 8780 Query 48653 CAATTTATATGTTTCAATAACAGAATCTATATCCCATTGATGTATACCTATAGATACACG 48712 | ||||| || || ||| |||| || || || ||| || || || | || ||||| Sbjct 8781 TAGATTATAAGTCTCTATAGCAGATTCAATGTCATCTTGGTGAATTCCAACAGCGACACG 8840 Query 48713 CATTAACATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGATTT 48772 ||||| ||||| ||| || | || |||||||| | ||| | | |||||||||| | Sbjct 8841 CATTATCATATGTTGTGGCCGCTCCACAATTTTATCATTGAGGCGAAGAAGATATGATCT 8900 Query 48773 TTCCAATGTTTTAAAACCAAAATAGTTGTATGAAAAGTCGTTATCATTAATAATTGATGA 48832 ||||| || || || |||||||| | ||| |||||| ||||| || || | || Sbjct 8901 TTCCAGAGTCTTGAAGCCAAAATACTGGTAATTAAAGTCTCGATCATAAACTATCGCGGA 8960 Query 48833 ATT 48835 ||| Sbjct 8961 ATT 8963 Score = 143 bits (158), Expect = 3e-29 Identities = 301/444 (68%), Gaps = 11/444 (2%) Strand=Plus/Plus Query 47013 GTTCGTAAATAATACATACCAGTCTTTAAACCTAAACTCCATCCATAGAAATGCATACTA 47072 || |||| || ||||| ||||| ||||| ||||| |||||||| ||||||||||| Sbjct 7132 GTACGTAGGTAGTACATGCCAGTTTTTAAGCCTAATTTCCATCCAGCAAAATGCATACTT 7191 Query 47073 GTTAATTTAGAATAACTAGGTTCTGAAATATGAATATTAAGAGATTGACTCTGATCAATA 47132 |||| ||| | | || ||| | |||||||| | || || |||||||||| Sbjct 7192 GTTATTTTGCCCATAGTTGGGTCTTTCAAGTGAATATTCATTGACTGTGACTGATCAATA 7251 Query 47133 AATGCACCTCTATCAGCTGCCATATCTAAAATAACCCTTTGTGGTATCTCCCATACTGTT 47192 |||||||| | |||||| ||||| | | || | |||| |||||||| |||||| Sbjct 7252 AATGCACCACGATCAGCAGCCATCTGAATTATGGTGCGCTGTGAGATCTCCCAAACTGTT 7311 Query 47193 TTATAAATTTGTTTAATGTCTTCTGGGAGATTAG---TATTTTGAATAGATCCTCCgttt 47249 || || | | |||||| || |||| | ||| | |||| |||||||| ||||| | Sbjct 7312 TTGTAGAGTGCTTTAATTTCGGCTGGAATATTTGATATATTCTGAATAGAGCCTCCATCA 7371 Query 47250 tctataattttgttttttaattcatttgacca-aag---ttttcgttcagttaatgtttt 47305 ||| || ||||| | | || ||||| ||| | || ||| || ||| Sbjct 7372 GATATGATGCGATTTTTCATGTTATCAGACCATAAGCCCATATCTACCAG---ATCTTTG 7428 Query 47306 taaAAGATGAGGATTAACAATTTGAAATTCTCCAGATAGTACTCTACGGCTATATATATT 47365 || | ||||| ||||||||||| ||||| | || || | || |||||||| Sbjct 7429 AGTAACCAG-GGATTTACAATTTGAAACTCTCCTGCTAAAACACGGCGTGAGTATATATT 7487 Query 47366 ACTTGTATATGGTTCTATAGATTCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGG 47425 | |||||||| || | | | |||||| ||||| ||||||| || ||| || || Sbjct 7488 AGAGGTATATGGCTCAAAACACTCATTAAATCCAAGAATTTGACTTGTACTTGCGGTTGG 7547 Query 47426 CATGGATGCAACTAATAAGCTATT 47449 ||| | || || | ||||||||| Sbjct 7548 CATTGGGGCTACGAGTAAGCTATT 7571 >seq3986 Length=15657 Score = 199 bits (220), Expect = 4e-46 Identities = 590/917 (64%), Gaps = 67/917 (7%) Strand=Plus/Plus Query 18657 CATTACTCCCATTTTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTC 18716 ||| ||||| |||||||| || | |||| |||||| || || ||||| || || | Sbjct 6392 CATCACTCCGGCCTTTTGATAGTCACCTACTCGTTTTTCGAAAAAGTTAGTCTTCCCAGC 6451 Query 18717 TAATGATATACATTCCATAAAATCAAATGGATTTTTTACATTATATAtttttttGAAT-- 18774 || || ||| |||||| ||||||||||||||||| || || |||| ||| |||| Sbjct 6452 CAAAGAGATATTTTCCATGAAATCAAATGGATTTTTGACTTTGTATACTTTG--GAATTT 6509 Query 18775 CCTAATTCTAATAGTAGTCTATCCGCTACAAATTTAATATATGTGTTCATCATATCACAA 18834 ||||| | || |||| ||| || || |||| || || ||||||| | Sbjct 6510 CCTAACGAGAGGAGAAGTCGATCTGCAACGAATTCGATGTACTGCTTCATCAGAGTGGCG 6569 Query 18835 TTCATTCCTATTAATTTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACT 18894 ||||| || | || || || || || || ||||||||||||||||| | || Sbjct 6570 TTCATGCCGAGTAGAGCGCATGGCAGCGCTTCAGTTAGAAATTCTTGTTCTATCTCGACG 6629 Query 18895 GCCTCTGATATAATAGATACAACTCTATCTTCATTAGGAGG---GTATAGAAGATGTTTA 18951 || | || |||| | ||| || | |||| || || | |||| | Sbjct 6630 GCTTGTGTGATAACATCCTGAACAGA--CTGC-TTAGATGGTCTGTGCTTCAAATGTGAA 6686 Query 18952 AACATCAAACATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAA 19011 || | | ||| ||||| || ||||| || ||||| | || | ||| |||||| Sbjct 6687 AAGAGGAGACAAGCAAAGTCCGTGTGTAGGCCTTCGTCACGTGAAATAAGTTCGTTAGAA 6746 Query 19012 AATGTTAAACCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCA 19071 || |||| |||| ||||| |||| ||| || ||||| || || |||||||| || ||| Sbjct 6747 AAGGTTAGGCCAGCCATCAACCCTCGTTTCTTCAACCAAAAAATGGAAGCAAAGGAACCA 6806 Query 19072 GAAAAGAATATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCA 19131 || ||||| || || ||||| |||||||| || || | || |||| | | | || Sbjct 6807 CTGAAAAATATTCCCTCCACTGCAGCAAAAGCTACAAGACGTTGTCCAAATGTCGACTCT 6866 Query 19132 TTATTATGAATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCA-------- 19183 || | |||||||| | ||||| |||| ||| || || | ||| || | Sbjct 6867 TTGTCTTGAATCCAACGGACGGCCCAGTCAGACTTTTTCTTAATACAAGGTACTATGAAT 6926 Query 19184 ----------------------------------------TTGTCTCTATAGAATTAAAT 19203 ||||||| |||| ||| || Sbjct 6927 CGTTAACGATTATCGCGATAGTGTGGGAAATGGGAATTACTTGTCTCGATAGCATTGAAA 6986 Query 19204 AGATACATACGCTCATCTGTATCTTTAACATATGCATCTATCAATAAACTGTACATTTCT 19263 ||||| | | | || |||||| | || | ||| || || | || |||| Sbjct 6987 AGATAAGTTTTTTGAGCTTGATCTTTTATGTAAGTATCGATTAAAAGCGAATAAGTTTCA 7046 Query 19264 GAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGT 19323 || || |||||||| || || |||||||| ||||| |||| || || | ||||| Sbjct 7047 GAGTGGATATTTTCCATCATAATTTGAAATCCATAAAAGAATCTAGCCTCAGGAATCTGC 7106 Query 19324 ACTTCACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAA 19383 |||||||| | ||| | ||||| | ||||||||||| || || || || |||||| Sbjct 7107 ACTTCACTGCTAAACCGCTCGACGAGGTTTTCATTAACAATCCCGTCTGAGGCGGCAAAA 7166 Query 19384 AATGCTAATACATGTTTAATAAAATGTTTTTCATC-----TGAGGTTAATG-TATTCCAA 19437 || |||| ||||| ||||| | | |||||| |||| | | |||||||| Sbjct 7167 AAGGCTAGCACATGAGATATAAAGTATCGTTCATCATCATTGAG---ACGGTTATTCCAA 7223 Query 19438 TCATTAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTT 19497 || | ||||||||||| ||||| | || ||| | ||||||||||| ||||| |||||| Sbjct 7224 TCGTGGATATCTTTAGACAAATCAATCTCCTCAGCAGTCCAAAAAGATGCCTCGGCTTTT 7283 Query 19498 TTATACATGTTCCATAT 19514 || ||||| | |||||| Sbjct 7284 TTGTACATATGCCATAT 7300 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562060564038600