Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Erysiphe_20necator_20[genbank_20GCA_5F000798775.1_202014-12-08] 6,865 sequences; 49,793,988 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq1897 147 4e-30 seq2201 131 3e-25 seq574 98.7 2e-15 >seq1897 Length=19642 Score = 147 bits (162), Expect = 4e-30 Identities = 156/206 (76%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 || || ||||| | ||||| || | ||| | || | ||||| || || ||||| Sbjct 4323 ATGCCTCCTCTTAGACGAAGCACTAAATGAAGAGTGGATTCTTTCTGGATGTTGTAGTCT 4382 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 ||||| |||| ||| || | ||||||||| ||||| ||||||| |||||| || ||| Sbjct 4383 GATAAAGTTCGGCCATCCTCAAGTTGTTTTCCTGCAAATATTAATCGCTGTTGGTCCGGA 4442 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || ||||||||||||||||| |||||| |||| | || ||| || || |||||||| Sbjct 4443 GGAATTCCTTCTTTATCTTGAATTTTGCTTTTGACGTTATCAATGGTGTCAGAAGACTCG 4502 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGT 193336 ||||| ||||| ||||||||||| || Sbjct 4503 ACTTCGAGAGTAATAGTTTTACCGGT 4528 Score = 131 bits (144), Expect = 3e-25 Identities = 156/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 |||| || ||||| | | ||||| |||| || | ||| | ||||| || ||| Sbjct 4878 ATTTGCATGCCACCACGAAGACGAAGGACCAAGTGGAGTGTCGATTCTTTTTGGATGTTA 4937 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 ||||| || | |||| | || || | ||||||||| |||||||||| ||| |||||| Sbjct 4938 TAGTCAGAAAGTGTTCGACCGTCCTCAAGTTGTTTTCCAGCAAAAATTAGTCTTTGTTGA 4997 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 || || || ||||||||||| ||||||||||| |||||| ||| || || || || Sbjct 4998 TCGGGTGGAATTCCTTCTTTGTCTTGTATTTTACTTTTTACATTGTCGATGGTGTCAGAC 5057 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGT 193336 ||||| || |||||||| || ||||| || || Sbjct 5058 GACTCGACCTCTAGAGTGATGGTTTTTCCAGT 5089 Score = 118 bits (130), Expect = 2e-21 Identities = 121/158 (77%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 193179 ATATTATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTC 193238 ||||| |||||||| | |||| ||| || || || ||||| || ||||| |||||| Sbjct 5210 ATATTGTAGTCGGAAAGTGTTCGGCCATCCTCCAACTGCTTTCCAGCGAAAATCAATCTC 5269 Query 193239 TGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTA 193298 ||||| || || || || |||||||| || || |||||| |||||| ||| |||||| Sbjct 5270 TGTTGGTCTGGTGGGATGCCTTCTTTGTCCTGAATTTTGCTTTTTACATTGTCGATAGTA 5329 Query 193299 TCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGT 193336 || || || || ||||| || ||||||||||| || || Sbjct 5330 TCAGATGATTCGACTTCAAGGGTTATAGTTTTGCCAGT 5367 Score = 114 bits (126), Expect = 2e-20 Identities = 119/156 (76%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 193205 ATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTT 193264 ||| || | ||| ||||| ||||| || ||||| ||||| || || || || |||||||| Sbjct 4169 ATCTTCAAGTTGCTTTCCAGCAAAGATCAATCTTTGTTGGTCCGGTGGAATACCTTCTTT 4228 Query 193265 ATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTAT 193324 |||||| || || |||| | || || ||||| ||||| || ||||| |||||||| Sbjct 4229 ATCTTGGATCTTACTTTTGACGTTGTCTATTGTATCTGAAGATTCTACTTCAAGAGTTAT 4288 Query 193325 AGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||||| || || | ||||| |||||||| ||||| Sbjct 4289 TGTTTTCCCAGTCAATGTTTTGACAAATATCTGCAT 4324 >seq2201 Length=24903 Score = 131 bits (144), Expect = 3e-25 Identities = 158/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 193146 CGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAA 193205 |||||||| ||||| | |||| ||||| || || ||||| || || || | Sbjct 11291 CGAAGTACGAGATGAAGAGTAGATTCTTTTTGGATGTTGTAGTCAGACAATGTCCGGCCG 11232 Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265 || || | ||||||||| |||||||| || | ||||| ||||| || || ||||| ||| Sbjct 11231 TCCTCGAGTTGTTTTCCCGCAAAAATCAAACGTTGTTGGTCAGGTGGAATGCCTTCCTTA 11172 Query 193266 TCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATA 193325 ||||| ||||| | ||||| ||| || || || || ||||| || || || || ||| Sbjct 11171 TCTTGGATTTTTGATTTTACATTGTCGATGGTGTCCGATGACTCCACCTCAAGCGTAATA 11112 Query 193326 GTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 |||||||| || || ||||| || || |||||||| Sbjct 11111 GTTTTACCCGTGAGGGTTTTCACGAAAATTTGCAT 11077 >seq574 Length=26839 Score = 98.7 bits (108), Expect = 2e-15 Identities = 126/174 (72%), Gaps = 0/174 (0%) Strand=Plus/Plus Query 193178 AATATTATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCT 193237 |||||| || || || | |||| ||| || | ||||| || ||||| || || | Sbjct 3122 AATATTGTAATCAGAAAGAGTTCGTCCATCTTCAAGCTGTTTACCAGCAAATATCAAACG 3181 Query 193238 CTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGT 193297 ||||||||||| || ||||| |||||||| || || || | ||| | ||| ||| || Sbjct 3182 TTGTTGATCAGGGGGGATTCCCTCTTTATCCTGGATCTTTGCTTTCACATTATCAATTGT 3241 Query 193298 ATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAA 193351 || || |||||||| |||| || |||||||| || ||||| || || || || Sbjct 3242 GTCAGAGGACTCAACCTCTAAGGTGATAGTTTTGCCAGTTAGGGTCTTGACGAA 3295 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899577198406800