Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Erysiphe_20necator_20[genbank_20GCA_5F000798775.1_202014-12-08] 6,865 sequences; 49,793,988 total letters Query= NC_023426.1 Length=245717 Score E Sequences producing significant alignments: (Bits) Value seq1897 131 3e-25 seq2201 102 1e-16 >seq1897 Length=19642 Score = 131 bits (144), Expect = 3e-25 Identities = 142/186 (76%), Gaps = 2/186 (1%) Strand=Plus/Minus Query 146055 ACAGGAAAAACAATTACTATTGATGTAGAA-CATAACGATACTATTCAAAATGTAAAAAA 146113 || || ||||| ||||| |||| ||||| ||| ||| || ||| | ||||| |||| Sbjct 4813 ACTGGTAAAACCATTACCCTTGAGGTAGAGTCATC-CGACACCATTGATAATGTGAAAAG 4755 Query 146114 TAAAATACAACTTAAAGAAGGCATTCCACCCGATCAACAAAGACTCATTTTTGCAGGTAA 146173 ||||||||| || ||||| ||||||||||||||||||||| | || ||||| || || Sbjct 4754 TAAAATACAGGACAAGGAAGGAATTCCACCCGATCAACAAAGATTAATCTTTGCTGGCAA 4695 Query 146174 ACAATTAGATGATAATAGAACGTTAACAGATTATAATATACAAAAAGAATCGACTATCCA 146233 |||| | || ||| | |||| ||| | ||||| || || ||||||||||| || | || Sbjct 4694 ACAACTTGAGGATGGTCGAACATTATCTGATTACAACATTCAAAAAGAATCTACCCTTCA 4635 Query 146234 TTTAGT 146239 | |||| Sbjct 4634 TCTAGT 4629 Score = 127 bits (140), Expect = 3e-24 Identities = 139/185 (75%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 146055 ACAGGAAAAACAATTACTATTGATGTAGAACATAACGATACTATTCAAAATGTAAAAAAT 146114 || |||||||| || ||| | || || || || || || | |||||||||| | Sbjct 5089 ACTGGAAAAACCATCACTCTAGAGGTCGAGTCGTCTGACACCATCGACAATGTAAAAAGT 5030 Query 146115 AAAATACAACTTAAAGAAGGCATTCCACCCGATCAACAAAGACTCATTTTTGCAGGTAAA 146174 ||||||||| |||||||| ||||||||||||||||||||||| |||||||| || ||| Sbjct 5029 AAAATACAAGACAAAGAAGGAATTCCACCCGATCAACAAAGACTAATTTTTGCTGGAAAA 4970 Query 146175 CAATTAGATGATAATAGAACGTTAACAGATTATAATATACAAAAAGAATCGACTATCCAT 146234 ||| | || || | |||| | | || ||||| || |||||||||||||| |||| Sbjct 4969 CAACTTGAGGACGGTCGAACACTTTCTGACTATAACATCCAAAAAGAATCGACACTCCAC 4910 Query 146235 TTAGT 146239 || || Sbjct 4909 TTGGT 4905 Score = 109 bits (120), Expect = 9e-19 Identities = 148/204 (73%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 146055 ACAGGAAAAACAATTACTATTGATGTAGAA-CATAACGATACTATTCAAAATGTAAAAAA 146113 || || ||||| || || |||| || ||| ||| |||||||| | |||||||||| Sbjct 5367 ACTGGCAAAACTATAACCCTTGAAGTCGAATCATCT-GATACTATCGACAATGTAAAAAG 5309 Query 146114 TAAAATACAACTTAAAGAAGGCATTCCACCCGATCAACAAAGACTCATTTTTGCAGGTAA 146173 ||||| || ||||||||||| ||||| || ||||| ||| | ||||| || || || Sbjct 5308 CAAAATTCAGGACAAAGAAGGCATCCCACCAGACCAACAGAGATTGATTTTCGCTGGAAA 5249 Query 146174 ACAATTAGATGATAATAGAACGTTAACAGATTATAATATACAAAAAGAATCGACTATCCA 146233 || || || ||| |||| | | || || ||||||||||||||||| ||| | || Sbjct 5248 GCAGTTGGAGGATGGCCGAACACTTTCCGACTACAATATACAAAAAGAATCCACTCTTCA 5189 Query 146234 TTTAGTATTACGATTAAGAGGAGG 146257 ||||| |||| ||| | || || Sbjct 5188 CTTAGTCCTACGTTTACGCGGTGG 5165 >seq2201 Length=24903 Score = 102 bits (112), Expect = 1e-16 Identities = 150/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAA-CATAAC 146090 ||||||| ||| | ||||| | || || ||||| ||||| |||| || || ||| Sbjct 11078 TGCAAATTTTCGTGAAAACCCTCACGGGTAAAACTATTACGCTTGAGGTGGAGTCATCG- 11136 Query 146091 GATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAA 146150 || || || | ||||||||| ||||| ||| ||| |||||||||||||| || ||| Sbjct 11137 GACACCATCGACAATGTAAAATCAAAAATCCAAGATAAGGAAGGCATTCCACCTGACCAA 11196 Query 146151 CAAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAAT 146210 ||| | | |||||||| || |||||| | || || | || || | || || || Sbjct 11197 CAACGTTTGATTTTTGCGGGAAAACAACTCGAGGACGGCCGGACATTGTCTGACTACAAC 11256 Query 146211 ATACAAAAAGAATCGACTATCCATTTAGTA 146240 || ||||||||||| ||| | ||| | ||| Sbjct 11257 ATCCAAAAAGAATCTACTCTTCATCTCGTA 11286 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 786098937095800