Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Erysiphe_20necator_20[genbank_20GCA_5F000798775.1_202014-12-08] 6,865 sequences; 49,793,988 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq1897 168 5e-37 seq2201 122 7e-23 seq574 102 6e-17 >seq1897 Length=19642 Score = 168 bits (186), Expect = 5e-37 Identities = 167/216 (77%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||| ||||| || || || || ||||| ||||| ||||| ||||| || || || Sbjct 4109 ACGAAGCACTAAGTGGAGAGTCGATTCCTTTTGTATGTTGTAATCGTTAAGAGTACGTCC 4168 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| || ||||| || |||||| | ||||||||||| || ||||| |||||||| ||||| Sbjct 4169 ATCTTCAAGTTGCTTTCCAGCAAAGATCAATCTTTGTTGGTCCGGTGGAATACCTTCTTT 4228 Query 29691 GTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 ||||| | || |||||| | |||| || || ||| |||||||||||||||||| Sbjct 4229 ATCTTGGATCTTACTTTTGACGTTGTCTATTGTATCTGAAGATTCTACTTCAAGAGTTAT 4288 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||||| ||||| || ||||| |||||||||||||| Sbjct 4289 TGTTTTCCCAGTCAATGTTTTGACAAATATCTGCAT 4324 Score = 134 bits (148), Expect = 1e-26 Identities = 145/192 (76%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||| || || | |||||| || ||||||||||||||||| ||||| | | || ||| Sbjct 4622 ACGGAGAACTAGATGAAGGGTAGATTCTTTTTGAATGTTGTAATCAGATAATGTTCGACC 4681 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| || ||||||||||||||| | || |||||||| ||||| || ||||| || || || Sbjct 4682 ATCCTCAAGTTGTTTGCCAGCAAAGATTAATCTTTGTTGATCGGGTGGAATTCCTTCCTT 4741 Query 29691 GTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 ||| |||| ||| ||| ||| | || | ||||| || ||||| ||||| || || Sbjct 4742 GTCCTGTATTTTACTTTTCACATTATCAATGGTGTCGGATGACTCTACCTCAAGGGTAAT 4801 Query 29751 AGTTTTGCCAGT 29762 ||||| ||||| Sbjct 4802 GGTTTTACCAGT 4813 Score = 132 bits (146), Expect = 4e-26 Identities = 151/203 (74%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 ||||| || | ||| ||||| |||||||| ||||||||||| || ||||| || || | Sbjct 4326 CCTCCTCTTAGACGAAGCACTAAATGAAGAGTGGATTCTTTCTGGATGTTGTAGTCTGAT 4385 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | || || ||| || |||||||| || ||| |||| |||| || || ||||| ||| Sbjct 4386 AAAGTTCGGCCATCCTCAAGTTGTTTTCCTGCAAATATTAATCGCTGTTGGTCCGGAGGA 4445 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || || ||||| ||||| | ||| |||||| | || | ||||||||| || ||| Sbjct 4446 ATTCCTTCTTTATCTTGAATTTTGCTTTTGACGTTATCAATGGTGTCAGAAGACTCGACT 4505 Query 29740 TCAAGAGTTATAGTTTTGCCAGT 29762 || ||||| |||||||| || || Sbjct 4506 TCGAGAGTAATAGTTTTACCGGT 4528 Score = 131 bits (144), Expect = 1e-25 Identities = 144/192 (75%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||| || ||||| || || || ||||||||||| |||||||| || | || || ||| Sbjct 4898 ACGAAGGACCAAGTGGAGTGTCGATTCTTTTTGGATGTTATAGTCAGAAAGTGTTCGACC 4957 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 || || |||||||| |||||| | || | |||||| ||||| || ||||| || ||||| Sbjct 4958 GTCCTCAAGTTGTTTTCCAGCAAAAATTAGTCTTTGTTGATCGGGTGGAATTCCTTCTTT 5017 Query 29691 GTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 |||||||| ||| ||| ||| | || | |||||||| || || || ||||| || Sbjct 5018 GTCTTGTATTTTACTTTTTACATTGTCGATGGTGTCAGACGACTCGACCTCTAGAGTGAT 5077 Query 29751 AGTTTTGCCAGT 29762 ||||| ||||| Sbjct 5078 GGTTTTTCCAGT 5089 Score = 120 bits (132), Expect = 2e-22 Identities = 143/194 (74%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 29569 AAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGA 29628 ||||| || || || ||||| |||||||||||||| || || || || | || || || Sbjct 5174 AAACGTAGGACTAAGTGAAGAGTGGATTCTTTTTGTATATTGTAGTCGGAAAGTGTTCGG 5233 Query 29629 GAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCT 29688 ||| || | || || ||||| | |||||||| || || || || || || || ||| Sbjct 5234 CCATCCTCCAACTGCTTTCCAGCGAAAATCAATCTCTGTTGGTCTGGTGGGATGCCTTCT 5293 Query 29689 TTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTT 29748 ||||| || | ||| ||| ||| | || | ||| ||||| ||| |||||||| ||| Sbjct 5294 TTGTCCTGAATTTTGCTTTTTACATTGTCGATAGTATCAGATGATTCGACTTCAAGGGTT 5353 Query 29749 ATAGTTTTGCCAGT 29762 |||||||||||||| Sbjct 5354 ATAGTTTTGCCAGT 5367 >seq2201 Length=24903 Score = 122 bits (134), Expect = 7e-23 Identities = 166/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 29559 TCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCG- 29617 |||||| | | ||| || || | |||||| || ||||||||||| ||||| || || | Sbjct 11304 TCCTCCACGAAGACGAAGTACGAGATGAAGAGTAGATTCTTTTTGGATGTTGTAGTCAGA 11245 Query 29618 CAATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCG 29677 ||||| | || || ||||||||||| || ||| | ||||| | ||| || || || | Sbjct 11244 CAATG-TCCGGCCGTCCTCGAGTTGTTTTCCCGCAAAAATCAAACGTTGTTGGTCAGGTG 11186 Query 29678 GAATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTA 29737 |||| || || || ||||| | |||| ||| ||| | || | ||||| || || | Sbjct 11185 GAATGCCTTCCTTATCTTGGATTTTTGATTTTACATTGTCGATGGTGTCCGATGACTCCA 11126 Query 29738 CTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 | ||||| || |||||||| || || | |||||| || || || ||||| Sbjct 11125 CCTCAAGCGTAATAGTTTTACCCGTGAGGGTTTTCACGAAAATTTGCAT 11077 >seq574 Length=26839 Score = 102 bits (112), Expect = 6e-17 Identities = 130/179 (73%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 29599 TTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATC 29658 |||||||| || ||||| | || || || ||| || || ||||| |||||| ||||| Sbjct 3117 TTTTGAATATTGTAATCAGAAAGAGTTCGTCCATCTTCAAGCTGTTTACCAGCAAATATC 3176 Query 29659 AATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCT 29718 || | ||| ||||| || || || |||||||| || || | ||| ||| ||| | || Sbjct 3177 AAACGTTGTTGATCAGGGGGGATTCCCTCTTTATCCTGGATCTTTGCTTTCACATTATCA 3236 Query 29719 ACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAA 29777 | |||||||| || || || | || |||||||||||||||| ||| || || || Sbjct 3237 ATTGTGTCAGAGGACTCAACCTCTAAGGTGATAGTTTTGCCAGTTAGGGTCTTGACGAA 3295 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385186969792965