Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Erysiphe_20necator_20[genbank_20GCA_5F000798775.1_202014-12-08] 6,865 sequences; 49,793,988 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq2084 262 9e-65 seq5142 100 7e-16 >seq2084 Length=12802 Score = 262 bits (290), Expect = 9e-65 Identities = 538/798 (67%), Gaps = 9/798 (1%) Strand=Plus/Minus Query 110304 TATTTTGGTTTCAAAACTCTTGAACGTGCTTATTTACTTCGTGTCAATGGCGAGATCATT 110363 |||||||| ||||| ||||| ||| | | ||| | ||||| |||||| | || | Sbjct 8924 TATTTTGGCTTCAAGACTCTGGAAAGATCATATCTTCTTCGCCTCAATGATAAAATTGTG 8865 Query 110364 GAACGTCCTCAACACATGTTTCTTCGTGTTGCGATTGGTATTCATGGACATGATATTAAA 110423 || || || ||||| ||| | | ||||| || |||| ||||| | |||| ||| || Sbjct 8864 GAGCGGCCACAACATATGATAATGCGTGTCGCTGTTGGAATTCACCAAGATGACATTGAA 8805 Query 110424 GCTGTTATTGAATGTTATGATGTATTAAGTAAAAAGAAAGCTATTCATGCTACTCCTACC 110483 ||| ||| || |||| || || | || || | || |||||| | ||||| Sbjct 8804 TCTGCTATAGAGACTTATAATCTAATGTCCAATAAATACTTTACGCATGCTTCCCCTACT 8745 Query 110484 CTATTTAACGCAGGAACTAATGGAGGACAATTGGCTTCTTGCTTTCTTCTAGGAATTAAC 110543 |||||| || || ||| | ||| | |||| |||||| | | | || || Sbjct 8744 CTATTTGCAGCCGGTACTCCACAATCTCAACTCTCTTCATGCTTTTTAATTGATATGAAA 8685 Query 110544 GATGATTCTATTGAAGGTATTTATGATGCTCTTAAAGAAACT---GCTCTTATTTCTAAA 110600 || ||| |||||| || || || ||| || | ||| ||| ||| | ||||||||| Sbjct 8684 GAGGATAGTATTGATGGAATCTACGATACTTTGAAA---ACTTGCGCTATGATTTCTAAA 8628 Query 110601 AACTCTGGAGGAATTGGTATTCACGTTCATGATATTCGCTCAAAAGGAGCAAATATCGCA 110660 || | || || ||||| | | ||||| |||||| | | ||| || |||||||| Sbjct 8627 AATGCCGGTGGTATTGGCTTAAATATTCATCGGATTCGCGCGACAGGTGCTTATATCGCA 8568 Query 110661 ACAGCGAAGGGTGCTTCAACTGGACTTGTTCCAATGTTAAGAGTCTTCAACGACACTGCA 110720 | | || || |||| ||| |||| || ||| | |||||||||| | ||||| Sbjct 8567 GGAACAAATGGAAACTCAAATGGTATTGTACCGATGCTCCGAGTCTTCAATAATACTGCC 8508 Query 110721 AAATATGTGAATCAAGGTGGTAAGAGAAAT---GGCTCATTTGCTATCTATCTCGAACCT 110777 | |||||| ||||||||||||| | | || |||| ||||| ||| | || || Sbjct 8507 AGATATGTTGATCAAGGTGGTAATAAGCGTCCGGGAGCATTCGCTATATATTTGGAGCCA 8448 Query 110778 TGGCATTCAGATATATTTGAATTCTTAGAACTTCGTAAAAATCAAGGATTTGAAGAACAA 110837 ||||| | ||||||||||| ||| | || || || |||||||| || |||||| Sbjct 8447 TGGCACGCCGATATATTTGAGTTCCTCGACCTCCGCAAAAATCACGGCAAAGAAGAAGTT 8388 Query 110838 AGAGCACGTGATTTATTTTATGCAATGTGGATTTCAGATTTATTCATGAAACGTGTTCAA 110897 | ||||||||| |||| ||||| | ||||| | ||| | || ||||| | ||| || Sbjct 8387 CGTGCACGTGATCTATTCTATGCCCTTTGGATACCTGATCTCTTTATGAAGAGAGTTGAA 8328 Query 110898 GAAAATGGCATGTGGTCTCTTATGTGTCCTCATCGTTCTCCTGGTCTATCTGATGTATAT 110957 ||||||| ||| | || ||||| ||| | | |||||||||| ||||||| ||| Sbjct 8327 AAAAATGGTGAATGGACCCTGATGTGCCCTTGTGAATGTCCTGGTCTAGCTGATGTGTAT 8268 Query 110958 GGAAAAGAGTTTGAAGACCTTTACGAAAAATATGAAAAAGAAGGCAAGTTTCGCAAACAA 111017 || | || ||||| | | || ||||| |||||| ||||||| || || | | Sbjct 8267 GGCGATGAATTTGAGGCTTTATATGAAAAGTATGAACAAGAAGGGAAAGGCCGTAGAACT 8208 Query 111018 ATTCCAGCTCAAGAACTTTGGTTCAAAATCCTTGAATCACAAGTTGAAACTGGAACTCCT 111077 ||| || ||| | || |||| | ||| | ||| ||||| |||||||| || ||| Sbjct 8207 ATTATGGCACAAAAGCTATGGTACTCAATAATCGAAGCACAAACAGAAACTGGTACCCCT 8148 Query 111078 TATATTTTGTATAAAGAT 111095 | ||| | || |||||| Sbjct 8147 TTTATGCTCTACAAAGAT 8130 >seq5142 Length=6971 Score = 100 bits (110), Expect = 7e-16 Identities = 138/193 (72%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 305293 TGATATTGTTATCAGACATTTGAATGACAATGATTGGGTTCTGTTCAATAGGCAACCATC 305352 |||||||||| || ||| | | || |||| ||||| || |||||||||||||| Sbjct 4876 TGATATTGTTGAGAGGCATCTAGAAGATGGTGATATTGTTCTCTTTAATAGGCAACCATC 4817 Query 305353 ACTGCATAAAATGTCTATGATGGCTCATAAAGTCAAAGTATTATCTGGATTGACATTTCG 305412 || ||||| | ||| ||| |||| | || || || | | || ||| | Sbjct 4816 CCTTCATAAGCTTAGTATCATGAGTCATTATGTAAAGGTTAGGCCATGGCGAACCTTTAG 4757 Query 305413 ATTAAATGTAAGTGCTTGTACGCCTTATAATGCGGATTTTGATGGAGATGAAATGAATAT 305472 ||| || | |||| ||||||||||| ||||| || ||||||||||||||||||||| | Sbjct 4756 ATTGAACGAGTGTGCCTGTACGCCTTACAATGCAGACTTTGATGGAGATGAAATGAATCT 4697 Query 305473 GCATGTACCTCAA 305485 || ||||||||| Sbjct 4696 ACACGTACCTCAA 4684 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186708410542265