Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Erysiphe_20necator_20[genbank_20GCA_5F000798775.1_202014-12-08] 6,865 sequences; 49,793,988 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq1897 129 4e-25 >seq1897 Length=19642 Score = 129 bits (142), Expect = 4e-25 Identities = 153/205 (75%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 ||| ||||| ||||| | ||| ||||| |||||| || || || ||||| || ||||| Sbjct 4325 GCCTCCTCTTAGACGAAGCACTAAATGAAGAGTGGATTCTTTCTGGATGTTGTAGTCTGA 4384 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 | ||||| | || ||||||||||| || ||||||||||| |||||||||||||| || Sbjct 4385 TAAAGTTCGGCCATCCTCAAGTTGTTTTCCTGCAAATATTAATCGCTGTTGGTCCGGAGG 4444 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATA-AAATTGTGTCTTCGCTCTCCA 34657 | ||| || || ||| ||| ||| |||| ||| || ||| ||||| ||| | Sbjct 4445 AATTCCTTCTTTATCT-TGAATTTTGCTTTTGACGTTATCAATGGTGTCAGAAGACTCGA 4503 Query 34658 CTTCCACGGTTATCGTTTTACCGGT 34682 |||| | || || ||||||||||| Sbjct 4504 CTTCGAGAGTAATAGTTTTACCGGT 4528 Score = 113 bits (124), Expect = 3e-20 Identities = 164/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | |||||| | ||| || |||||||| |||||||| ||||| ||||| | Sbjct 4098 CCACCGCGAAGACGAAGCACTAAGTGGAGAGTCGATTCCTTTTGTATGTTGTAATCGTTA 4157 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || | ||||||||||| || || ||||| || || | ||||||||||| || Sbjct 4158 AGAGTACGTCCATCTTCAAGTTGCTTTCCAGCAAAGATCAATCTTTGTTGGTCCGGTGGA 4217 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | || || || ||| |||| || |||| ||| | ||||| ||| || || Sbjct 4218 ATACCTTCTTTATCTTGGATC-TTACTTTTGACGTTGTCTATTGTATCTGAAGATTCTAC 4276 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 ||| | ||||| ||||| || || || ||||| ||||| ||||||||| Sbjct 4277 TTCAAGAGTTATTGTTTTCCCAGTCAATGTTTTGACAAATATCTGCATG 4325 Score = 96.9 bits (106), Expect = 2e-15 Identities = 103/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 ||| || | |||||| | ||||| ||||| || || ||||| |||||||| || || Sbjct 4886 GCCACCACGAAGACGAAGGACCAAGTGGAGTGTCGATTCTTTTTGGATGTTATAGTCAGA 4945 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 ||||||||| |||| ||||||||||| || ||||| |||| | ||||| || || || Sbjct 4946 AAGTGTTCGACCGTCCTCAAGTTGTTTTCCAGCAAAAATTAGTCTTTGTTGATCGGGTGG 5005 Query 34599 CACTCCCTCCTTGTCT 34614 | ||| || |||||| Sbjct 5006 AATTCCTTCTTTGTCT 5021 Score = 89.7 bits (98), Expect = 3e-13 Identities = 146/205 (71%), Gaps = 4/205 (2%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | |||||| | || | ||| || || || ||||||||||| ||||| || Sbjct 4611 CCACCACGAAGACGGAGAACTAGATGAAGGGTAGATTCTTTTTGAATGTTGTAATCAGAT 4670 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | |||||| | || ||||||||||| || ||||| ||||| | ||||| || || || Sbjct 4671 AATGTTCGACCATCCTCAAGTTGTTTGCCAGCAAAGATTAATCTTTGTTGATCGGGTGGA 4730 Query 34600 ACTCCCTCCTTGT-CTGTGATCTTTTGTTTTAACGATA-AAATTGTGTCTTCGCTCTCCA 34657 | ||| ||||||| |||| || ||| |||| || || ||| ||||| ||| | Sbjct 4731 ATTCCTTCCTTGTCCTGT-AT-TTTACTTTTCACATTATCAATGGTGTCGGATGACTCTA 4788 Query 34658 CTTCCACGGTTATCGTTTTACCGGT 34682 | || | ||| || |||||||| || Sbjct 4789 CCTCAAGGGTAATGGTTTTACCAGT 4813 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314703267459545