Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Erysiphe_20necator_20[genbank_20GCA_5F000798775.1_202014-12-08] 6,865 sequences; 49,793,988 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq2201 131 4e-25 seq1897 127 5e-24 seq2084 86.0 1e-11 >seq2201 Length=24903 Score = 131 bits (144), Expect = 4e-25 Identities = 156/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || || |||||||||||||| ||||||||||||||||| || | || || | || || Sbjct 11288 AGTACGAGATGAAGAGTAGATTCTTTTTGGATGTTGTAGTCAGACAATGTCCGGCCGTCC 11229 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || ||| || || || || | | || ||||| | | || |||||||| ||| Sbjct 11228 TCGAGTTGTTTTCCCGCAAAAATCAAACGTTGTTGGTCAGGTGGAATGCCTTCCTTATCT 11169 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 || |||||| ||| ||| | || | | |||| || ||| || ||||| ||||||||| Sbjct 11168 TGGATTTTTGATTTTACATTGTCGATGGTGTCCGATGACTCCACCTCAAGCGTAATAGTT 11109 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || |||||||| || |||||||| | ||||| Sbjct 11108 TTACCCGTGAGGGTTTTCACGAAAATTTGCAT 11077 >seq1897 Length=19642 Score = 127 bits (140), Expect = 5e-24 Identities = 141/188 (75%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || || | ||||||||| || ||||| ||||||||||| || | |||||||| ||||| Sbjct 4341 AGCACTAAATGAAGAGTGGATTCTTTCTGGATGTTGTAGTCTGATAAAGTTCGGCCATCC 4400 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || ||| || || || || | | ||| ||||||| | |||||||| || ||| Sbjct 4401 TCAAGTTGTTTTCCTGCAAATATTAATCGCTGTTGGTCCGGAGGAATTCCTTCTTTATCT 4460 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 |||||||| |||||| | || | | |||| ||| ||| ||||| |||||||||||| Sbjct 4461 TGAATTTTGCTTTTGACGTTATCAATGGTGTCAGAAGACTCGACTTCGAGAGTAATAGTT 4520 Query 152073 TTGCCCGT 152080 || || || Sbjct 4521 TTACCGGT 4528 Score = 116 bits (128), Expect = 9e-21 Identities = 139/189 (74%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951 ||| || |||||||| ||||| |||||||| ||||||||||| | ||| |||| ||||| Sbjct 4625 GAGAACTAGATGAAGGGTAGATTCTTTTTGAATGTTGTAATCAGATAATGTTCGACCATC 4684 Query 151952 TTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTC 152011 || || ||| || || ||||| | || || || || | | ||||||||||| || Sbjct 4685 CTCAAGTTGTTTGCCAGCAAAGATTAATCTTTGTTGATCGGGTGGAATTCCTTCCTTGTC 4744 Query 152012 TTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGT 152071 || ||||| ||| ||| | || | | |||| || |||||| ||||| ||||| || Sbjct 4745 CTGTATTTTACTTTTCACATTATCAATGGTGTCGGATGACTCTACCTCAAGGGTAATGGT 4804 Query 152072 TTTGCCCGT 152080 ||| || || Sbjct 4805 TTTACCAGT 4813 Score = 104 bits (114), Expect = 5e-17 Identities = 147/205 (72%), Gaps = 4/205 (2%) Strand=Plus/Plus Query 151902 TGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAG--GC 151959 || ||||| || || ||||| |||||||||||| | ||| | |||||||| || || Sbjct 4122 TGGAGAGTCGATTCCTTTTGTATGTTGTAATCGTTAAGAGTACGTCCATCTTCAAGTTGC 4181 Query 151960 TTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTT 152019 ||| || || ||||| | || || ||||||| | || ||||| || ||||| || | Sbjct 4182 TTT--CCAGCAAAGATCAATCTTTGTTGGTCCGGTGGAATACCTTCTTTATCTTGGATCT 4239 Query 152020 TTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCG 152079 | |||||| | |||| | |||||| |||||||||||||| || ||||| || | Sbjct 4240 TACTTTTGACGTTGTCTATTGTATCTGAAGATTCTACTTCAAGAGTTATTGTTTTCCCAG 4299 Query 152080 TGAGAGTCTTCACGAAGACCTGCAT 152104 | | || || || || | |||||| Sbjct 4300 TCAATGTTTTGACAAATATCTGCAT 4324 Score = 89.7 bits (98), Expect = 1e-12 Identities = 135/190 (71%), Gaps = 4/190 (2%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 ||||| | |||||||| || |||||||| || ||||| |||| | |||| ||||| Sbjct 5180 AGGACTAAGTGAAGAGTGGATTCTTTTTGTATATTGTAGTCGGAAAGTGTTCGGCCATCC 5239 Query 151953 TCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTT 152010 || | ||||| || ||||| || | ||||| ||||| | | ||| ||||| || | Sbjct 5240 TCCAACTGCTTT--CCAGCGAAAATCAATCTCTGTTGGTCTGGTGGGATGCCTTCTTTGT 5297 Query 152011 CTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAG 152070 | |||||||| ||| ||| | || | | || || || |||||||| || |||| Sbjct 5298 CCTGAATTTTGCTTTTTACATTGTCGATAGTATCAGATGATTCGACTTCAAGGGTTATAG 5357 Query 152071 TTTTGCCCGT 152080 ||||||| || Sbjct 5358 TTTTGCCAGT 5367 >seq2084 Length=12802 Score = 86.0 bits (94), Expect = 1e-11 Identities = 188/279 (67%), Gaps = 2/279 (1%) Strand=Plus/Minus Query 115629 TTCTATGCCATTTGGACATCTGATCTTTTTATGAAGCGAGTCAAGGCAAACGGAATGTGG 115688 ||||||||| |||||| | ||||||| ||||||||| |||| | ||| || ||| Sbjct 8372 TTCTATGCCCTTTGGATACCTGATCTCTTTATGAAGAGAGTTGAAAAAAATGGTGAATGG 8313 Query 115689 AGCCTCTTTTGTCCCAATGAAGCCCCTGGTCTTGATGATGTTTATGGTCCAGAGTTTGAG 115748 | ||| | || || |||| |||||||| | |||||| ||||| || |||||| Sbjct 8312 ACCCTGATGTGCCCTTGTGAATGTCCTGGTCTAGCTGATGTGTATGGCGATGAATTTGAG 8253 Query 115749 AATCTTTACGAAAGGTACGAGAAAGAGGGAAGAGCCAAAAGGGTTGTGAAGGCGCAAGAC 115808 | | || |||| ||| || |||| || | || | || | | | ||| ||| | Sbjct 8252 GCTTTATATGAAAAGTATGAACAAGAAGGGAAAGGCCGTAGAACTATTATGGCACAAAAG 8193 Query 115809 CTTTGGCA-TCATATCCTTGTCACACAGTCAGAGGTCGGAATGCCCTTTATTGCGTACAA 115867 || ||| | ||| || | | |||| |||| || | || ||||| ||||| Sbjct 8192 CTATGGTACTCA-ATAATCGAAGCACAAACAGAAACTGGTACCCCTTTTATGCTCTACAA 8134 Query 115868 AGATGCAGTTTGTCGAAAGAGCAATCAAAAGAATTTCGG 115906 ||||||| | | ||||||||||||||| ||| |||| Sbjct 8133 AGATGCATGTAATAAAAAGAGCAATCAAAAAAATCTCGG 8095 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153719312446415