Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Erysiphe_20necator_20[genbank_20GCA_5F000798775.1_202014-12-08] 6,865 sequences; 49,793,988 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq2201 147 5e-30 seq1897 134 3e-26 >seq2201 Length=24903 Score = 147 bits (162), Expect = 5e-30 Identities = 156/206 (76%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||||||||| ||||| || ||||| || || || |||||||| || ||| Sbjct 11080 CAAATTTTCGTGAAAACCCTCACGGGTAAAACTATTACGCTTGAGGTGGAGTCATCGGAC 11139 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| || || ||| ||| || || || || ||||| || || || ||||| ||| Sbjct 11140 ACCATCGACAATGTAAAATCAAAAATCCAAGATAAGGAAGGCATTCCACCTGACCAACAA 11199 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | || || || |||||||| ||||| || || |||| | | || || ||| || Sbjct 11200 CGTTTGATTTTTGCGGGAAAACAACTCGAGGACGGCCGGACATTGTCTGACTACAACATC 11259 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 ||||||||||| || || ||||| || Sbjct 11260 CAAAAAGAATCTACTCTTCATCTCGT 11285 >seq1897 Length=19642 Score = 134 bits (148), Expect = 3e-26 Identities = 142/186 (76%), Gaps = 1/186 (1%) Strand=Plus/Minus Query 177943 TCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAAC 178002 |||| |||||||| ||||| || ||||| || || ||||||||||| || || ||| Sbjct 5091 TCACTGGAAAAACCATCACTCTAGAGGTCGAGTCGTCTGACACCATCGACAATGTAAAAA 5032 Query 178003 AAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAA 178062 || || || |||||||||||||| || || || || ||| |||| || || || |||| Sbjct 5031 GTAAAATACAAGACAAAGAAGGAATTCCACCCGATCAACAAAGACTAATTTTTGCTGGAA 4972 Query 178063 AACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGC 178122 |||| || || || || | || ||| | || |||||| ||||||||||||| ||||| | Sbjct 4971 AACAACTTGAGGACGGTCGAACACTTTCTGACTATAACATCCAAAAAGAATCGACACTCC 4912 Query 178123 ATCTTG 178128 | |||| Sbjct 4911 A-CTTG 4907 Score = 122 bits (134), Expect = 2e-22 Identities = 135/180 (75%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 177945 ACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAACAA 178004 || || ||||| || || ||||| || || || |||||||| || ||||||||| Sbjct 4528 ACCGGTAAAACTATTACTCTCGAAGTCGAGTCTTCTGACACCATTGATAACGTCAAAAGC 4469 Query 178005 AAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAA 178064 || ||||| || ||||||||||| ||||||||||| || ||| | || || || |||||| Sbjct 4468 AAAATTCAAGATAAAGAAGGAATTCCTCCGGACCAACAGCGATTAATATTTGCAGGAAAA 4409 Query 178065 CAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCAT 178124 || || || ||||| | ||| | | || || ||| |||| |||||||| || || ||| Sbjct 4408 CAACTTGAGGATGGCCGAACTTTATCAGACTACAACATCCAGAAAGAATCCACTCTTCAT 4349 Score = 111 bits (122), Expect = 4e-19 Identities = 136/186 (73%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 177945 ACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAACAA 178004 || || ||||| || ||||| ||||| || || |||||||| || || || ||| Sbjct 4813 ACTGGTAAAACCATTACCCTTGAGGTAGAGTCATCCGACACCATTGATAATGTGAAAAGT 4754 Query 178005 AAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAA 178064 || || |||||||| |||||||| || || || || ||| || | ||||| || || ||| Sbjct 4753 AAAATACAGGACAAGGAAGGAATTCCACCCGATCAACAAAGATTAATCTTTGCTGGCAAA 4694 Query 178065 CAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCAT 178124 || || || ||||| | || | | ||||| ||| | ||||||||||| || || ||| Sbjct 4693 CAACTTGAGGATGGTCGAACATTATCTGATTACAACATTCAAAAAGAATCTACCCTTCAT 4634 Query 178125 CTTGTT 178130 || ||| Sbjct 4633 CTAGTT 4628 Score = 111 bits (122), Expect = 4e-19 Identities = 132/179 (74%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 177945 ACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAACAA 178004 || || ||||| || ||||| || || ||| || || || ||||| || || ||| Sbjct 5367 ACTGGCAAAACTATAACCCTTGAAGTCGAATCATCTGATACTATCGACAATGTAAAAAGC 5308 Query 178005 AAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAA 178064 || ||||||||||||||||| ||||| || ||||| || || | || ||||| ||||| Sbjct 5307 AAAATTCAGGACAAAGAAGGCATCCCACCAGACCAACAGAGATTGATTTTCGCTGGAAAG 5248 Query 178065 CAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCA 178123 ||| | || ||||| | || ||| |||| || || | ||||||||||| || || || Sbjct 5247 CAGTTGGAGGATGGCCGAACACTTTCCGACTACAATATACAAAAAGAATCCACTCTTCA 5189 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203625322436810